Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq32038 217 5e-52 seq8276 168 2e-37 seq102312 154 5e-33 seq73294 123 8e-24 seq36676 113 1e-20 seq73638 111 5e-20 seq35373 89.7 2e-13 >seq32038 Length=828 Score = 217 bits (240), Expect = 5e-52 Identities = 329/464 (71%), Gaps = 12/464 (3%) Strand=Plus/Minus Query 38858 GGCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGGGTGAAGGAGCTGTTCGAGAC 38917 ||||||||| ||||||||||| || || | | |||||||| |||| | Sbjct 460 GGCGGTCAGGCCGAAGCGGATGTCGGTGCGACGGC---GGGTGAAGTTCGCACTCGACTC 404 Query 38918 CGACACGTCGGGCGGCAGGACGTGAAGTCCCATCCGCCGTGCCTCGCCGAGGTACGTGGC 38977 ||||| ||||| || || | | ||||| || || |||| ||||||| || Sbjct 403 GTTGACGTCCGGCGGGAGCACCTTGATGCCCATGCGGCGGCACTCGTTGAGGTACAGCGC 344 Query 38978 CATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTA 39037 | ||||| ||||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 343 CGACTTGTCCTTGTCGTCGCGCACCGAGGTGAGGACGGCGGCCATGTACTCGGCCGGGTA 284 Query 39038 GTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCTT 39097 || | ||| ||||| || || | ||| | ||||| ||||| ||||| ||||||| ||| Sbjct 283 GTTGGCCTTGAGGTAGGCGGTCCAGTACGTGATGACGCCGTAGGCCGCGGAGTGCGACTT 224 Query 39098 GTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCACCGTC 39157 |||||| ||||| ||| ||| || | ||| | ||||||| | | ||| || | | Sbjct 223 GTTGAACGCGTAGTCGGAGAACGGGAGGAGGATCTCCCACAGCTTGTCGATCGCGGCCTG 164 Query 39158 CGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTC 39217 || | || | |||||| || || ||||||| || ||| |||| | || |||| Sbjct 163 CGGGAAGTCGCGCTCGAGCATGCCGGCCTGGAAGCCGGCGTACTGCTTGTCGAGCTCCTC 104 Query 39218 GGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGC--CTG-ACCCAGGCTGTACCC 39274 ||||||||||||||| || ||||| || |||||| | | || ||| || |||| Sbjct 103 CTTCTTCTTCTTGCCCATCGCGCGGCGCAGGTTGTCGGCGGCGGCGCCGAGGGTGAACCC 44 Query 39275 AGCGAGGATCTGTGC---CGCCTTCTGCACCTGCTCCTGGTAGA 39315 ||||| | ||| || ||| | |||||||||||||||| Sbjct 43 CGCGAGCACCTGCGCGATGGCCAT---GACCTGCTCCTGGTAGA 3 >seq8276 Length=3740 Score = 168 bits (186), Expect = 2e-37 Identities = 271/384 (71%), Gaps = 14/384 (4%) Strand=Plus/Plus Query 40027 AGGGCTTGTCCAGCACGCGCGCCGCGTC---CTTCATCGCGTTGCGCGCCTTGATCCGAC 40083 ||| |||| || |||| |||||| |||| | || ||| ||| ||| || | | Sbjct 521 AGGACTTGCCCTGCACCCGCGCCACGTCGCGCACCACCGCCTTGGCGGCCATGGTGC--- 577 Query 40084 CGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCA 40143 ||||||| |||||| ||| || |||||| |||| ||||| ||||| Sbjct 578 CGAAGGTGATGATCTGGCTCACCGCCTCGCGGCCGTACAGGTCGGCCACGTATTCGATCA 637 Query 40144 C---GTCGCC-CCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40199 | ||||| ||||| | || |||||||| ||| | |||||||||||| | || Sbjct 638 CCCGGTCGCGACCGTCCATG--CA--GAAGTCGACGTCGAAGTCGGGCATGGAGATCCGT 693 Query 40200 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATG 40259 |||||||| ||||| |||||||| | || | | | | || || ||||| ||||| Sbjct 694 TCGGGGTTGAGGAAGCGCTCGAACAGCAGGTCATAGGCCAGCGGATCGAGGTCGGTGATC 753 Query 40260 CCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACG 40319 ||| |||||||||||| || |||||| ||||||| || ||||| |||||| |||| Sbjct 754 TTGAGTACGTAGGCGACCAGGGAGCCGGCACCCGAGCCCCGGCCGGGGCCGACCGGCACG 813 Query 40320 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCC 40379 ||||| | ||| ||||| ||||||||| |||| |||||||| ||||| ||| Sbjct 814 CCGTTGTTCTTCGCCCACTTGATGAAGTCCATCACGATGAGGAAGTAACCGGGGAAGCCC 873 Query 40380 AGCTGGATGATCATGTCGATCTCG 40403 | ||||||||| ||||||| |||| Sbjct 874 ATCTGGATGATGATGTCGAGCTCG 897 >seq102312 Length=400 Score = 154 bits (170), Expect = 5e-33 Identities = 271/393 (69%), Gaps = 9/393 (2%) Strand=Plus/Minus Query 40919 GGCCTCGTCGTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGT 40978 ||||||||||||||| || ||| ||||| ||| | | | || ||||| ||||| Sbjct 390 GGCCTCGTCGTACTGGCCCAGGCGCAGCCGCGTCTGCACCTCCCCCGACGGGCAGCCCGT 331 Query 40979 GGTGACGATCAGGCCCTCGTTGTGCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTT 41038 |||| |||| ||||| | || || | || ||| ||| ||||||||| || ||| Sbjct 330 GGTGGCGATGAGGCCGGAGGAGTACTGCGAGAGCAGCTCGCGGTCCATGCGGGG---CTT 274 Query 41039 CCCGAGCAGGCCCTCCTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGT 41098 ||| | |||||| || | || ||| | ||| | |||||||||| |||||| Sbjct 273 GTAGAGGAAGCCCTCGAGGCTGGCCAGGCTGCTCATCTTGAACAGGTTGTGCATGCCGGT 214 Query 41099 CTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGTAACG 41158 | ||||||| || || ||||| | ||| ||||||| ||| ||| ||||||| | Sbjct 213 CGTGTTCTCGGCCAGCATCGTCATGTGGGTGTACGAGCCGGCACCCGAGACGTCGTCGCC 154 Query 41159 CTTCTGGTCCTCGGTG---CCCCACTTGACGCGCTCCTGGTCGAAGCGCGA---GCCCGG 41212 || | | || | |||||||| |||||| || ||| ||||| |||||| Sbjct 153 GGAGCGGCCGTTGGGGTCGCCCCACTTCACGCGCGTCTTGTCCTGGCGCGCCGTGCCCGG 94 Query 41213 AGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGAGCCGTGGTGAA 41272 | || ||||||||||| ||||||||||||||||||||| || ||||| | | Sbjct 93 CGTCAGGTACGCCTCGACGCCGATGATCGGCTTGACCCCGTGCTTCTTCGCCGTCTTCCA 34 Query 41273 GAAGTCGTGGGCACCGTGCAGGTTGCCGTGGTC 41305 |||||||| ||| ||| | | ||||||||| Sbjct 33 GAAGTCGTAGGCGCCGAAGACGAAGCCGTGGTC 1 >seq73294 Length=656 Score = 123 bits (136), Expect = 8e-24 Identities = 204/286 (71%), Gaps = 9/286 (3%) Strand=Plus/Plus Query 40094 GATCTGTGCGACCTTGTCCGC-CCCGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCC 40151 |||||| || |||| || ||| ||| || || || || || || | |||||| || | Sbjct 158 GATCTGCGCCACCT-GTTCGCGCCCATATTTG-CGCTGCACATAGCGGATCACCTCTTCG 215 Query 40152 CGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCA 40209 || || || | || ||||||||| || | ||||||||| |||||||| || ||||| | Sbjct 216 CGGCGATCCTGGCA--GAAGTCGATATCGAAGTCGGGCATCGACACGCGTTCCGGGTTGA 273 Query 40210 GGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGT 40269 |||| || ||||||| ||| | | | || || | || || || || || Sbjct 274 GGAAGCGTTCGAAGAGCAGCGAGAAGCGTAGCGGATCGACATCGGTAATCGTCAGCGCGT 333 Query 40270 AGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCT 40329 ||||||||||||| || ||| |||| ||||| || || |||||| | | | || || Sbjct 334 AGGCGACCAGCGATCCCGCACCCGAACCACGACCAGGGCCGACCGGAATATCATGCTGCT 393 Query 40330 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40375 | ||||| |||||||||||| |||| ||||||||| | |||||| Sbjct 394 TTGCCCATTTGATGAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 438 >seq36676 Length=975 Score = 113 bits (124), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 ||| |||| ||| | ||||||||||| ||||| || ||||| || || || ||||| | Sbjct 606 GAAATCGACGTCGAAATCGGGCATGGAAACGCGTTCAGGGTTAAGAAAACGTTCGAACAG 665 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAAC 40284 || || | | ||| || || || || || ||| ||| ||||| |||||||||| Sbjct 666 CAGGTCGAACTCAAGGGGATCGAGATCGGTAATTTTGAGCGCA-TAGGCCACCAGCGAAC 724 Query 40285 CGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40344 |||| |||| || ||||| || || ||| |||||||| || || | ||| ||| | Sbjct 725 CGGCCCCCGAACCGCGTCCCGGCCCTACCGGTACGCCGTTATCTTTCGACCACTGGATAA 784 Query 40345 AGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGAT 40390 | || |||| |||||||||| ||||| |||| |||| |||| Sbjct 785 ACTCCATTACGATCAGGAAGTAGCCGGGGAATCCCATCTGGTTGAT 830 >seq73638 Length=482 Score = 111 bits (122), Expect = 5e-20 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 40191 GACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG-AGCCCGTGCGGGATGGGGTCCAG 40249 ||||||| |||||||| ||||| |||||||| | | || || ||| | |||||||| Sbjct 3 GACACGCT-TCGGGGTTGAGGAAGCGCTCGAACACGCAGGTTGTACGGCAGCGGGTCCAG 61 Query 40250 GTCTGTGAT--GCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCG-AGCCACGTCCGGG 40306 ||| ||||| || | | | | || |||||||| || | |||| |||| || || || Sbjct 62 GTCGGTGATCTGCAGCGCCC--ACGCCACCAGCGAGCCCGGCGCCGGAGCCGCGGCCCGG 119 Query 40307 TCCGACCCAC-ACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGT 40365 |||| | | ||| | | |||| |||| |||||||||||| |||| |||||||| Sbjct 120 GCCGATCGGGGATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGT 179 Query 40366 AGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACT 40407 || ||||| |||| || ||||||| |||| | |||| ||| Sbjct 180 AGCCGGGGAAGCCCATCTTGATGATCGTGTCCAGCTCGAACT 221 >seq35373 Length=484 Score = 89.7 bits (98), Expect = 2e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40757 GTAGTGCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAGGTGCTTGCCCAGCCGGTAGAG 40816 ||||||| |||||||||| | ||| | | || |||||| ||| | |||| || Sbjct 12 GTAGTGCAGGTCGTTCGTGCCGACGAGCGGGATGCCGAGGTCCTTCGAGATCCGGACGAC 71 Query 40817 GTCGTCGCGGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAGGAAGTACCG 40876 ||| ||| ||| || ||||||||||| || ||||||||||||||||| |||||| Sbjct 72 GTCCTCGATGACCCGGCGCTCGATCTCGAGCCCGTGGTCCATGATCTCGGCGAAGTAGTT 131 Query 40877 GTCCCGACCGAAGA 40890 |||| |||||||| Sbjct 132 GTCCTTACCGAAGA 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159893012138400