Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq31280 199 4e-46 seq33108 163 3e-35 seq34305 122 9e-23 >seq31280 Length=10079 Score = 199 bits (220), Expect = 4e-46 Identities = 341/492 (69%), Gaps = 2/492 (0%) Strand=Plus/Plus Query 141201 GGACTAAACAGAGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 141260 || |||||||| ||||||| || ||| | || || | ||||| || || | | Sbjct 1288 GGGCTAAACAGCGTGATGTCCTCGCCCTTCAGCAGGCGCTGGTACATCATTTTGTTGAGC 1347 Query 141261 TGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 141320 || || || || || | ||||| | ||||| | || ||||| |||||| || || Sbjct 1348 TGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACCACGGTTGTTTTTCAGG 1407 Query 141321 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 141380 || | ||| |||| ||||||| ||||| || |||||| |||| ||||| ||||| ||| Sbjct 1408 ACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAGCGTCGCTGCGCCGCCA 1467 Query 141381 CGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGTTTCCAGAAAGGAATA 141440 ||||| || || || || |||||||| || ||||| |||||||| || |||| || ||| Sbjct 1468 CGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGTGCTTGTAGAACGGGATA 1527 Query 141441 ACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTCGGCGCGAATCATGCCT 141500 || ||||| |||||||| | ||| ||| ||||| || || Sbjct 1528 CAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCAGCGCGCGGATACGACCC 1587 Query 141501 GCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAATTGATGCAGCAGCT-TC 141559 || ||||||||||||||||| || | | ||||||| ||| | || | || | | Sbjct 1588 GCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAATAG-CGCTGGAGGTCGC 1646 Query 141560 GTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGAACTGAACTGGCGTGT 141619 ||| || |||| || || || |||| |||||| | || || || |||||||| || || Sbjct 1647 GTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGGAGCTGAACTGACGGGT 1706 Query 141620 CGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTTTTTAGTAGAAACTGC 141679 || ||||| || || ||||| ||||| || |||| || || || || |||| || Sbjct 1707 TGGCGTACGCACTCCCGACATGATTGGCGTCGGCAGGGAGATTTTAAACGTGGAAATCGC 1766 Query 141680 ATCATAGAAACG 141691 ||| |||||||| Sbjct 1767 ATCGTAGAAACG 1778 >seq33108 Length=3479 Score = 163 bits (180), Expect = 3e-35 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60000 TCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAGTTAAAGCGC 60059 || || || |||||||| || ||||| ||||| ||||| || ||||| || ||||||||| Sbjct 2958 TCCGTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGC 2899 Query 60060 ACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGCTCAACCGCG 60119 || || || ||||||||||||||||| |||||||| || || || ||||| | || ||| Sbjct 2898 ACGGCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCG 2839 Query 60120 TCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTC 60172 || ||| ||||| || ||||| ||||||||||| | |||||| |||||||| Sbjct 2838 TCTTCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTC 2786 >seq34305 Length=2218 Score = 122 bits (134), Expect = 9e-23 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 59991 TATAGTGCCTCTGTGAAAGTACGGGCGATAACGTCGCGCTGCTGTTCTGGTGTCAGGGAG 60050 || |||| || || || ||||||| || ||||| ||||||| ||| || || ||| Sbjct 587 TAGAGTGACTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAG 646 Query 60051 TTAAAGCGCACCGCGTAGCCGGAAACACGAATGGTAAGCTGCGGGTATTTTTCCGGATGC 60110 |||||||| || || ||||| ||||| || ||||| | ||| || ||||| || || | Sbjct 647 TTAAAGCGAACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTA 706 Query 60111 TCAACCGCGTCCAGCAGAGTTTCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCT 60170 || | ||||||| || |||| || || ||||||||| ||||| ||||| |||||| Sbjct 707 TCCATTGCGTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCT 766 Query 60171 TCAAT 60175 ||||| Sbjct 767 TCAAT 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537465574816000