Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq33108 176 5e-39 seq49372 136 4e-27 seq31280 113 5e-20 seq49234 111 2e-19 seq50823 104 3e-17 seq34305 89.7 6e-13 >seq33108 Length=3479 Score = 176 bits (194), Expect = 5e-39 Identities = 147/180 (82%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || || || ||| | |||||||| || ||||| |||||||| |||||||| || || || Sbjct 2789 GGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTGAAA 2848 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 ||||| || || ||||||||| ||||||| ||||| ||||| ||||| || |||||||| Sbjct 2849 CATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTTAAT 2908 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTACTGAGAGTCTATAA 142720 || ||||| || ||||| ||||||||||| || || ||||||||||| || ||| ||||| Sbjct 2909 TCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGAAAGTTTATAA 2968 >seq49372 Length=1062 Score = 136 bits (150), Expect = 4e-27 Identities = 248/361 (69%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 136598 TATGACCATGATACTATTCATGAAGCCATTGCACTAACAGACCGTCCAGCGTATACATTT 136657 |||||||||||||||||||| ||||| || | || ||| || || |||| Sbjct 635 TATGACCATGATACTATTCACGAAGCGATAAAAGTACTTGACAAACCTGCATATATGAAC 576 Query 136658 TATATGAAAGATGGTTCTGAAGTCATGACCTCACGCGAGAAGTTCGAATCATTACCAGAA 136717 ||||| || ||| | || || ||||| || |||||| || |||| Sbjct 575 TATATTGTGGAAGGTGCAGACGTTATGACAAGTAAAGAAAAGTTCTTTGCA----CAGAG 520 Query 136718 --ATG--GTCAAATTGGCCGGCGTATACGAAGAATCATGTGTACTAGCGTTAGAACGTTC 136773 ||| || ||||| || ||||| |||||| ||||||| || || ||||||||||| Sbjct 519 CGATGAAGTTAAATTATTGGGTGTATATGAAGAAACATGTGTTCTTGCATTAGAACGTTC 460 Query 136774 TCAGATTCCTAATAATTTTGAAATCCATCCACGTGATAGTTTTATGATGGCCCTTGAAAA 136833 || || ||||||||||||||||| |||| ||| | |||||||| | || | | || Sbjct 459 ACAAATCCCTAATAATTTTGAAATTGATCCTCGTCAGAGTTTTATTACTGCTTTAGTTAA 400 Query 136834 GGTCTGTACATCAATCACATCAGGATGGTTCCGTGAGTTCGCTTGGGAAAATTATAGCAA 136893 || |||| || || ||||||||||| | || || ||||||| |||| || | Sbjct 399 AGTGTGTAGTAGTATTACGTCAGGATGGTTTAGAGAATTTTCTTGGGAGAATTTTAATAC 340 Query 136894 AGTAGTAAGTATGTACCAAAGCTTAGGACACGACGATTACGTCAAGCGTTTCAAACAAAA 136953 |||||| | |||||| | | || || | || ||||| | || ||||||||| |||| Sbjct 339 AGTAGTTAATATGTATCGTAAATTTGGCGAAGATGATTATATTAAACGTTTCAAAGAAAA 280 Query 136954 C 136954 | Sbjct 279 C 279 >seq31280 Length=10079 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 61936 CATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCTCAA 61995 ||||| ||| ||| || |||| || || ||||| || || || ||||| ||||| || Sbjct 1538 CATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACAGCGGTGAAATCCTGTTCGCAG 1479 Query 61996 GGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTAGAG 62055 || || | ||||| || || || || || |||||||||||||| | |||||||| Sbjct 1478 GGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTGGCATCTGGAAGTAGAA 1419 Query 62056 AACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATGGAC 62115 | ||| ||||| |||||||| ||| || ||||| | ||||| | || || |||||| Sbjct 1418 AGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCGCGTACGTCACATGGAC 1359 Query 62116 TACGG 62120 ||||| Sbjct 1358 TACGG 1354 >seq49234 Length=879 Score = 111 bits (122), Expect = 2e-19 Identities = 131/176 (74%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 140346 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGACCGATCAACATCTTATGGCTGAG 140405 ||||| ||||||||| | || || ||| | | || ||||||||||||||||| Sbjct 549 ATGACCCGTATCAATCTCGTACCAGTACAAGAATTAGCTGACCAACATCTTATGGCTGAA 490 Query 140406 TATCGTGAATTACCACGCGTATTTAGTGCAGTCCGTAAACATGTCCAAAACGGTAAACGT 140465 || |||||||| ||||| ||||| |||| || ||||| || || ||| |||||||| Sbjct 489 TACCGTGAATTGCCACGTGTATTCGGTGCTGTTCGTAAGCACGTACAAGCTGGTAAACGA 430 Query 140466 GTAAAGGATTTTAAAATCTCTCCAACATTTATCTTAGGCACAGGTCACGTAACATT 140521 | || |||||||||||| | | || | || ||||| |||||||| || ||||| Sbjct 429 ATCAATGATTTTAAAATCAGTACTACCTACAT-TTAGGTACAGGTCATGTTACATT 375 >seq50823 Length=3276 Score = 104 bits (114), Expect = 3e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 140346 ATGACTCGTATCAATTTAACACTTGTTTCTGAACTGACCGATCAACATCTTATGGCTGAG 140405 |||||||| || |||||| | ||| ||| || ||||||||||||| |||||||| Sbjct 308 ATGACTCGGATAAATTTAGTTCCGGTTCAGGAATTGGCCGATCAACATCTGATGGCTGAA 249 Query 140406 TATCGTGAATTACCACGCGTATTTAGTGCAGTCCGTAAACATGTCCAAAACGGTAAACGT 140465 ||||||||||||||||| |||||| ||||||| | ||||| || | || ||| | Sbjct 248 TATCGTGAATTACCACGTGTATTTGGTGCAGTAAGGAAACACGTTGATGCTGGGAAA-AT 190 Query 140466 GTAAAGGATTTTAAAATCTCTCCAACATTTATCTTAGGCACAGGTCACGTAACATTCTTT 140525 | || ||||||||||| | || | ||| | || ||||| || || || || ||| Sbjct 189 ATTAATGATTTTAAAATAAGTAAAAGCTATATTCTTGGAACAGGACATGTTACCTTTTTT 130 Query 140526 TA 140527 || Sbjct 129 TA 128 >seq34305 Length=2218 Score = 89.7 bits (98), Expect = 6e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 142541 GGTGGTCAACACCTGAACGTTAATGTTCTGCGTCGTGAAACTCTGGAAGATGCAGTTAAG 142600 || || || || ||||| ||||| || || || |||| || || ||| | | Sbjct 765 GGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCAATGGAT 706 Query 142601 CATCCAGAAAAATATCCGCAGTTGACCATCCGTGTATCCGGTTATGCAGTTCGCTTTAAC 142660 | || || |||||||| ||||| |||||||| || || || ||||| |||||||||||| Sbjct 705 AACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGCTTTAAC 646 Query 142661 TCTCTGACTCCGGAACAGCAGCGTGACGTTATCGCTCGTACCTTTAC 142707 || || || || ||||||| ||||| || | ||||||||||| Sbjct 645 TCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTAC 599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541775343828000