Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031091.1 Length=43277 Score E Sequences producing significant alignments: (Bits) Value seq48682 367 4e-97 seq11766 288 3e-73 seq26185 214 5e-51 seq91618 147 6e-31 seq103062 96.9 1e-15 seq51067 82.4 2e-11 >seq48682 Length=383 Score = 367 bits (406), Expect = 4e-97 Identities = 284/338 (84%), Gaps = 0/338 (0%) Strand=Plus/Minus Query 9360 CACAGCGTTTCGGTGGTGGCCCGGCGCAACGGCGTCAATGCCAATCAACTATTTCACTGG 9419 || ||||| |||||| | ||| ||||||||||| |||||||||| || || || | ||| Sbjct 381 CAGAGCGTCTCGGTGATCGCCAGGCGCAACGGCATCAATGCCAACCAGCTTTTCCTATGG 322 Query 9420 CGCAAGCTTTACCAGGACGGAAGTTTGTCGGCGGTCAGCGCCGGTGAAGCCGTGGTGCCT 9479 ||||| || ||| |||| || || |||||||||| |||||||||||||||||| || || Sbjct 321 CGCAAACTCTACTAGGAAGGCAGCTTGTCGGCGGCCAGCGCCGGTGAAGCCGTCGTTCCA 262 Query 9480 GCGTCCGAGTTGAGCGATGCGCTCAGGCAGATTCGTGAGCTACAACGGATGCTGGGCAAG 9539 || || ||| ||| ||||||||| | ||| || || || || || || ||||| ||||| Sbjct 261 GCTTCTGAGCTGAACGATGCGCTAAAGCAAATACGCGAACTTCAGCGAATGCTTGGCAAA 202 Query 9540 AAGACGATGGAAGCCGAAGTCCTCAAAGAGGCCGTGGAGATAGCCCGCTCGCGAAAATGG 9599 ||||| |||||||||||||| |||||||||| ||||||||| || || |||||||||||| Sbjct 201 AAGACCATGGAAGCCGAAGTGCTCAAAGAGGTCGTGGAGATCGCTCGTTCGCGAAAATGG 142 Query 9600 ATTGCGCACTCACCCTTGTTGCCGGGGGACGGTCAGTGAAACTGGTCAGTGAATGTCTCG 9659 ||||||||||||||||||||||| |||||| ||||||| |||||||| ||| |||||| Sbjct 141 TTTGCGCACTCACCCTTGTTGCCGAGGGACGACCAGTGAAGCTGGTCAGCGAAAGTCTCG 82 Query 9660 GTGTGGCGCGCTCGCAATTAACGGTTCGACTCAAACAA 9697 ||||| ||||||| || ||||||||||| ||||||||| Sbjct 81 GTGTGTCGCGCTCTCAGTTAACGGTTCGGCTCAAACAA 44 >seq11766 Length=389 Score = 288 bits (318), Expect = 3e-73 Identities = 279/355 (79%), Gaps = 3/355 (1%) Strand=Plus/Minus Query 6078 GGCAAGGGGCGCACCCTCAACATCCGTCCGGGCTTCGTTCTGACTCC-GGTGGCACTCGA 6136 ||||||| ||||||||| |||||||| |||| || ||| | || || |||||| || || Sbjct 373 GGCAAGGCGCGCACCCTGAACATCCGCCCGGCCTACGTCATCACCCCCGGTGGCGCTGGA 314 Query 6137 GGACAAGGCCAACCAGATCATCAACTCCGAGTCCGTGCCGGGCGCCGACGTCAATAGCGG 6196 |||||||| ||| | ||| | | || |||||| |||| | |||| ||| Sbjct 313 AGACAAGGCGCGGCAGCTGATCCGCAGTGCCTCGGTGCCGACCGCCCAGGTCACGC-CGG 255 Query 6197 CATCGTCAACCCGATTCGCGCATTCGCGCAGGTGATCGGCGAGCCGCGCCTGGACGATTC 6256 | | | |||||||||||| ||||| ||||||||||||| ||||| ||||||||| | Sbjct 254 CGTAGAGAACCCGATTCGCAACTTCGCCGAGGTGATCGGCGAACCGCGTCTGGACGATGC 195 Query 6257 CTCGGCGACCGCCTGGTACATGGCTGCCAAGAAAGGCTCTGACACCATCGAGGTGGCCTA 6316 |||||||| |||||||||||||| |||||| | ||| ||||| ||||||||||||| Sbjct 194 GTCGGCGACTGCCTGGTACATGGCCGCCAAGCAGGGCAGCGACACG-TCGAGGTGGCCTA 136 Query 6317 CCTGGACGGCGTCGATACTCCGTACCTGGAGCAACAGGAAGGCTTCACTGTCGACGGCGT 6376 || |||||||||| || |||||| ||||||| |||||||||||||| ||||||||||| Sbjct 135 TCTCAACGGCGTCGACACCCCGTACATGGAGCAGCAGGAAGGCTTCACCGTCGACGGCGT 76 Query 6377 GGCCAGCAAGGTGCGCATCGACGCCGGCGTGGCGCCGCTGGACTTCCGCGGGCTG 6431 ||||||||||||||| ||||| ||||||||| |||| || |||||| ||| Sbjct 75 GGCCAGCAAGGTGCGGATCGATGCCGGCGTGAGCCCGCGCGATAGCCGCGGCCTG 21 >seq26185 Length=1059 Score = 214 bits (236), Expect = 5e-51 Identities = 445/646 (69%), Gaps = 20/646 (3%) Strand=Plus/Minus Query 36703 CCCTGACGATGAGCAGTCGTGAGATTGCGGATCTGACCGGCAAGAAGCACAAGAACGTCT 36762 ||||||| |||||||| || ||||| || || ||| || |||| | |||||| ||||| Sbjct 664 CCCTGACCATGAGCAGCCGCGAGATAGCTGAACTGGTCGACAAGCAACACAAGGACGTCA 605 Query 36763 TGAGGGATATTCGGGAGATGCTGGAGGCGTTG-AGGAGGAATGGCTCAGATTTGAGCCAT 36821 | | || || || | ||||| | |||| || | ||||| |||| |||||||| ||||| Sbjct 604 TCCGCGACATCCGTGTGATGCAGAAGGCCCTGGAAGAGGA-TGGCGCAGATTTGCGCCAT 546 Query 36822 GTCCGGGAAGACCTCGACTCCCGCGGATACACCGAGAATTTCCACCTCGACCGAGACCTG 36881 |||| || || ||| ||||| |||||| ||||||||||||| |||||| Sbjct 545 CTCCGTGAGGAGAAGGACGGGCGCGGGTACACCAGCGCTTTCCACCTCGACAAGGACCTG 486 Query 36882 ACCGAGACCCTCATCTCTGGATACAGCGTTCCCCTCCGGTACCGGGTGATTCGGCGACTC 36941 |||||||||||| | | || |||||| | || || || || ||||||||| || ||| Sbjct 485 ACCGAGACCCTCGTAACCGGCTACAGCATCCCGCTGCGCCACAAGGTGATTCGCCGCCTC 426 Query 36942 CACGAGCT-GGA--GTC---CCGCCAG--GTT--CCGAGCATCCCAACCAGT--TTGCCG 36989 |||||||| ||| ||| ||||| | | | | | | || |||| || | Sbjct 425 CACGAGCTCGGAGCGTCACGCCGCCCGTCGCTGGCTGTGGCGCCGCCTCAGTCCTTCGCC 366 Query 36990 GAAGCGCTCAGGCTCGCCGCCGACCAGGCCGAACAGAACCAGGCGCTGC-GATTGGTCAT 37048 | ||||| | || ||||||||||||||||| | || || | || | || | | Sbjct 365 GCGGCGCTTCGCCTGGCCGCCGACCAGGCCGAGCTGATTGAGCGCCAGCAGGCTGAGC-T 307 Query 37049 CAATGAGCAGGCACCCAAGGTCCAGGCCTTGGAGCGACTCAGCGGCGCAGCCGGAACGAT 37108 ||| | || ||||| | ||| ||||||| || ||| | || | || Sbjct 306 GGCCGAGGCCTCGCCGAAGGTTGAAGCCCTGGAGCGCATCGCTGGCTCCCGTGGCGCCAT 247 Query 37109 GTGCATCACGGATGCTGCCAAGCACCTGAAGGT-CAGCCCCTCCAGGCTCTTTGACTGGC 37167 |||||| || || || ||||||||||||||||| ||||| | || | || || ||||||| Sbjct 246 GTGCATTACCGACGCCGCCAAGCACCTGAAGGTGCAGCCGCGCC-GCCTGTTCGACTGGC 188 Query 37168 TCCAGCAGAACCGATGGATCTACCGCCGGAGCGGCTCTGCTCGCTGGATCGGCTATCAGC 37227 | || ||||||| |||||||||| || |||| | |||||| |||| | |||| Sbjct 187 TGAAGGAGAACCGCTGGATCTACCAGCGCCCCGGCAGCACCCGCTGGGTCGG-AACCAGC 129 Query 37228 CACGAATCCAAGACGGCTGGATCATGCACAAGGTGACGGTTCTCGGTCGTGACGACCAGG 37287 | || || || ||||| ||| | |||||| | || || | ||||| |||| Sbjct 128 CGCGCATTCAGTCCGGCTTCATCCTCCACAAGATCACCACCATCCGCGCCGACGAGCAGG 69 Query 37288 GCGACGAGCGTGCGGCGAGCCAGGTACGCATCACTGCCAAGGGGCT 37333 |||| ||| || || | ||| || | ||||||| ||||||| || Sbjct 68 GCGAACCGCGCGCTGCCACCCA-GTGCTCATCACTCCCAAGGGCCT 24 >seq91618 Length=322 Score = 147 bits (162), Expect = 6e-31 Identities = 209/294 (71%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 42691 GGGTTTGGTTCAAGGACGAAGCGGACGGTGCGCAGCCTGCATCGGTGTGGATTGCCCCTG 42750 |||| ||| |||||||||| |||||| | ||| || | |||| | || || | Sbjct 17 GGGTGTGGATCAAGGACGAGGCGGACAAGTCATCGCCCGCCACCAAGTGGCTGGCACCCG 76 Query 42751 AGGTCTACGGTGGCCCGCGTCGGAACAAGCCGGCCGAACTTCAGCTCAGGGCCAAGGGGA 42810 ||||||||||||| || | |||||| |||| ||| | || || | Sbjct 77 AGGTCTACGGTGGTGATCGCCCTGACAAGCGCAGCGAAGCGATGCTACGAGCGCGAGGCA 136 Query 42811 TACTGCCAGAAGGCAAGTACGTGGTGCCCGGCGCCGGCGCGGACCTGGATCGCTACGGGA 42870 | ||||| | || ||||||| |||||| || || || || ||||| |||| ||||| | Sbjct 137 TCCTGCCCGCCGGAAAGTACGCGGTGCCAGGTGCAGGGGCTGACCTTGATCAATACGGCA 196 Query 42871 ACATCAGGCGCGGCCAGGTCACCAAGGCGTTGAGCGGCATCCGCGGCTTCAGCCAGGCCG 42930 |||||| |||||||||| | ||||||||| || |||||||| |||||| | || | | Sbjct 197 ACATCAAGCGCGGCCAGCTGACCAAGGCGCTGTCAGGCATCCGAGGCTTCGGTGAGACGG 256 Query 42931 GGTACAACGCGAACGCGACCGATAGCAGACGGAGCAGGGCGAAGGGTAATGCTC 42984 |||||||||| ||||| ||||| |||| || ||| ||| ||| | || |||| Sbjct 257 GGTACAACGCCAACGCCACCGACAGCAAGCGCAGCCTGGCCAAGCGCAACGCTC 310 >seq103062 Length=468 Score = 96.9 bits (106), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 24627 GGCATCCAGTAGCGGTTGAGTGTGCCCTTGTAGTTGCTGCGTGTTGTCTCGACGATTTCC 24686 |||||||||||| |||| || | ||||||||||||| | || ||| || ||| ||| Sbjct 226 GGCATCCAGTAGAGGTTCAGCGCGCCCTTGTAGTTGTTCCGCGTTCCAGCGGTGATGTCC 167 Query 24687 CTGCTGTCGAGCCAGATTTGGGCGTACTCGCCGAAGGTTGG---AATCGACGCGCTTTTG 24743 | ||| || ||||| | ||||| || | ||||||||| | | | |||| | ||| Sbjct 166 CGGCTATCCAGCCATAGCTGGGCATATTGCCCGAAGGTTTGCCCACCCCCCGCGATGTTG 107 Query 24744 ACGTAAGAAGAATCGGGGAAGAGTTCCGCGTACTTCTCTTCGGTCATCACCCCCAGCTTG 24803 || || | ||||| || || || |||||| | | ||||| ||||||||| Sbjct 106 AC------CGAGCCCGGGAACAGCTCGGCATACTTCGC-GCATCCATCAGGCCCAGCTTG 54 Query 24804 ATCAATTGGACTACCTGAGTTCTGAGACGATCGGCCTCGGCGATCCCTTTCGC 24856 |||| |||||||||||| ||| || |||| | | ||||||||| || Sbjct 53 ATCAGCTGGACTACCTGATCTCTAAGCTTGGCGGCAGCCGAGATCCCTTTTGC 1 >seq51067 Length=840 Score = 82.4 bits (90), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 9932 CGCCGGCATGAAGGCCGTATCGCCGTTAACACCAGCGACACGCGCTGGTGCTCGGATGGC 9991 || || || || |||||| || | || || || |||| ||||||||||| || | Sbjct 638 CGGCGCCACGACGGCCGTGTCTCGGTCGACCGGCGCAACACCCGCTGGTGCTCCGACGCG 697 Query 9992 TTCGAATTCCGCTGCGACGACGGTGCGAAACTGAGCGTGACCTTTGCCCTGGACTGCTGT 10051 |||| || |||||||| |||| | ||| | |||| ||||||| || ||||||||| Sbjct 698 CTCGAGATCGGCTGCGACAACGGCGAGAAGGTCCGCGTCGCCTTTGCGCTCGACTGCTGT 757 Query 10052 GATCGCGAAGCCATCGGCTGGGTGGCCAGCCCGACC---GGCTACAGCGGCGATGACATA 10108 || || ||||| || || || |||| | ||| ||| || || ||| ||| | Sbjct 758 GACCGGGAAGCGATGGGGCACGTCGCCA---CTACCGGTGGCATCACCGCCGAGGACGTC 814 Query 10109 CGCGACTTGATG 10120 |||||| ||||| Sbjct 815 CGCGACCTGATG 826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138150706415400