Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031094.1 Length=33105 Score E Sequences producing significant alignments: (Bits) Value seq115158 911 0.0 seq116308 547 1e-151 seq29199 518 7e-143 seq123790 327 2e-85 seq119229 269 6e-68 seq32415 255 1e-63 seq115959 178 3e-40 seq125381 80.6 6e-11 >seq115158 Length=1188 Score = 911 bits (1010), Expect = 0.0 Identities = 753/905 (83%), Gaps = 10/905 (1%) Strand=Plus/Plus Query 18110 AATGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGC 18169 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 286 AATGATTAATTTTAAATTACGTTTGCAAAATAAAACTACACTAGTAGCTCTTATCTCAGC 345 Query 18170 AGTATTCCTTATGTTGCAACAGTTCGGGCTTCACATTCCGACCAACATTCAAGAGGGATT 18229 ||||||||||||||||||||| || |||||| | ||||| ||| || ||||| | | Sbjct 346 AGTATTCCTTATGTTGCAACAATTAGGGCTTGAAATTCCACACAATATCCAAGACGCTGT 405 Query 18230 AAATACTTTTGTGGGAATTTTGGTTATTCTTGGAATCGTGACAGACCCTACCACTAAAGG 18289 |||||| || | | |||||||||||| || |||||||| || ||||| |||||||| || Sbjct 406 AAATACATTCATTGCAATTTTGGTTATCCTCGGAATCGTTACCGACCCAACCACTAAGGG 465 Query 18290 AATCGCTGACAGCGAACGAGCATTGAACTATGATGTACCACTAAACGATAAA-AAGGAGA 18348 || || ||||||||||||||||||| |||||| ||||||| |||| || ||||| | Sbjct 466 GATTGCAGACAGCGAACGAGCATTGAGCTATGAACAACCACTAGACGAAAAGGAAGGA-A 524 Query 18349 AATAAAATGAGCG-TACCACAATCTATTGTTAATTGGTTTGTTATTCACCGCAATCTTCT 18407 |||| ||||||| ||| |||||||||||| ||||||||||||| || || | | | Sbjct 525 AATAGTATGAGCGATACAACAATCTATTGTAAATTGGTTTGTTAACCATCG-AGGCAAAT 583 Query 18408 T-ACCTACTCAATGTTTGGCTCACGGAATGGCTCAGACGGTACAGCTGACTGCTCTGGTT 18466 | ||||| ||||||| ||| ||||| || || ||||||||||||||||||||||||||| Sbjct 584 TGACCTATTCAATGTATGGGTCACGCAACGGAGCAGACGGTACAGCTGACTGCTCTGGTT 643 Query 18467 CTATGTCTCAAGCCCTAAAAGACGCAGGCATTCCTATCCAAGGGTTGCCATCTACTGTCA 18526 | || || |||||||||||||| || || ||| ||| ||||| | ||||||||||| | Sbjct 644 CCATATCACAAGCCCTAAAAGAAGCTGGTATTGGTATTCAAGGTCTACCATCTACTGTTA 703 Query 18527 CTCTTGGTCAACAACTTGCTAAAAATGGATTTTATCGTGTAAGTATTAATCAGGATTGGG 18586 | || |||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||| Sbjct 704 CACTAGGTCAACAACTTGCCAAAAATGGATTCTATCGAGTAAGTATTAATCAAGATTGGG 763 Query 18587 ACGCCTTGACAGGAGATATCGTAATGATGTCGTGGGGTGCTGACATGTCACAATCTGGTG 18646 | || |||||||| ||||| || | ||||| |||||| |||| ||||| |||||| | Sbjct 764 ATGCTTTGACAGGCGATATTGTGTTAATGTCATGGGGTTCTGATATGTCCACATCTGGCG 823 Query 18647 GTGCAGGTGGTCACGTTGGTGTTATGATGGATAGCGTAAACTTTATTAGTTGTGATTATT 18706 | || || || ||||||||||| ||||||||| | ||||||||||||| ||||||| Sbjct 824 GAGCTGGAGGGCACGTTGGTGTCATGATGGATGCTACATACTTTATTAGTTGCGATTATT 883 Query 18707 CAACACAAGGAGCAGTAGGACAAGCTATCAGTACATATCCTTGGAACGACTACTATGCAG 18766 |||| ||||| ||| || |||||||||| ||| || || ||||| ||||||||||||| Sbjct 884 CAACTCAAGGGGCACCTGGGCAAGCTATCAATACTTACCCGTGGAATGACTACTATGCAG 943 Query 18767 CTAATAAGCCTCGATATATCGAAGTTTGGCGATATGCTGAATCAGCACCACAAACGAATA 18826 | || |||||| ||||||||| || ||||| ||| |||| | ||||| ||||| || | Sbjct 944 CGAACAAGCCTGCATATATCGAGGTGTGGCGTTATTCTGACACTGCACCGCAAACCAACA 1003 Query 18827 ACCAAGCTAATACTGC-GGTAG-TGCCACAACAAAATGCTTACTATGAAGCAAATGAAGT 18884 ||||||||||||| || | ||| ||||||||||| |||||||||||||| |||||||| Sbjct 1004 ACCAAGCTAATACAGCAGCTAGACACCACAACAAAAGGCTTACTATGAAGCTAATGAAGT 1063 Query 18885 CAAATATGTTAAT-GGTATTTATCAGATTAAATGTGATTATTTGGCACC-AGTGGGCTTT 18942 ||| |||||| || |||| ||||| |||||||| ||||||||||| || || || Sbjct 1064 TCAATTCGTTAATGGGAATTTGGCAGATCAAATGTGACTATTTGGCACCTGGTTGGATTC 1123 Query 18943 GACTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGT-GAACGCAAACAAAGCGGTGT 19001 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1124 GACTGGGTTAACTAATTTTCGGCTCAGTATAAACTAAGTGGAACGCAAACAAAGCGGTGT 1183 Query 19002 CATGC 19006 ||||| Sbjct 1184 CATGC 1188 >seq116308 Length=333 Score = 547 bits (606), Expect = 1e-151 Identities = 327/335 (98%), Gaps = 6/335 (2%) Strand=Plus/Minus Query 21969 TCGGTAAAGACAACAAAGTTCACAGTAAAATT-ACAACTGTTTGGACACAGCTTGGACGA 22027 ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 333 TCGGTAAAGACAATAAAGTTCACAGTAAAATTTACAACTGTTTGGACACAGCTTGGACGA 274 Query 22028 CGATTTATTTATGAAAAGTTAAAAGATAATGACATTTACCCATTGATTGAACAAGTGGAA 22087 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 273 CGATTTATTTATGAAAAGTTAAA-GATAATGACATTTACC-ATTGATTGAACAAGTGGAA 216 Query 22088 TTGTTCTAACCACATATCCAGCTAGGTTGATACGGCTCTAGCAGACGCCTCCGAAATATA 22147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 215 TTGTTCTAACCACATATCCAGCTAGGTTGATACGGCTCTAGCAGACGCCTCCGAAATATA 156 Query 22148 GATAATTGACATGATGAAACGAACTACATTAGATTGTCTGCTAGGGCTATACAAGCCTAG 22207 ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| | Sbjct 155 GATAATTGACATGATGAAACGAACTCCATTAGATTGTCTGCTAGGGC-ATACAAGCCT-G 98 Query 22208 CTGGAAAAC-AAAAAAGCCGCCGAATAACCAACGACTTACATAAAAAACTTACTTATATT 22266 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 97 CTGGAAAACAAAAAAAGCCGCCGAATAACCAACGACTTACATAAAAAACTTACTTATATT 38 Query 22267 TTATCAGAAAGGAAAATACTATGAAACCATCAAAA 22301 ||||||||||||||||||||||||||||||||||| Sbjct 37 TTATCAGAAAGGAAAATACTATGAAACCATCAAAA 3 >seq29199 Length=407 Score = 518 bits (574), Expect = 7e-143 Identities = 355/399 (89%), Gaps = 1/399 (0%) Strand=Plus/Plus Query 23622 TATGAGTTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACTACTAGTGATAA 23681 ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 1 TATGAATTTAGATCAAACAGCTAGACAGATGCGACAGCTATATATGACCACTGCCAATAA 60 Query 23682 ATACTGCGAGAAGCACAATCGAAACTTTGTCACTATTCAGCTACCAAACAGCAAGCCATA 23741 ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| Sbjct 61 ATACTGCGAGAAGCATAATCGAAACTACGTCACTATTCAGCTACCAAACAGCAAGCCATA 120 Query 23742 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGAAACTGAATTATATTAAAGCGCA 23801 ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| || Sbjct 121 CACTGTATGTGAGACGTGCCATCGTGAAGAGCAAGAGCGACAGAATTCTATTAAAGCACA 180 Query 23802 GGAACAATATGAACGTGAGCAAGAGCAAAAACGCTTGTTCTTTCTCAAAGATTTCAGTTT 23861 ||||| | ||| ||||||||||||||||||||||| | |||||||||||||||||| || Sbjct 181 AGAACAGTTTGAGCGTGAGCAAGAGCAAAAACGCTTATACTTTCTCAAAGATTTCAGCTT 240 Query 23862 GATGGATGATGATTTAGAAAGTGCTAGCTTTGAAACTTACCATGCTGTTACCAAAGAGCA 23921 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 241 GATGGATGATGATTT-GAAAGTGCTAGCTTTGAAACCTACCATGCTGTTACCAAAGAGCA 299 Query 23922 AAAGGAAGACTTGAAGAACGTCCGAAGCCAGCTTAAAGGCTATCTTGATGGTCAAGACTA 23981 |||||||||||||||||| || ||||| || || | ||| || | || || || || || Sbjct 300 AAAGGAAGACTTGAAGAATGTTCGAAGTCAACTCAGAGGATACTTAGACGGACAGGATTA 359 Query 23982 TAACATTGTTCTTATCGGTGATACTGGTGTCGGTAAGAG 24020 ||||| ||||| || ||||| || |||||||| ||||| Sbjct 360 CAACATAGTTCTAATAGGTGACACGGGTGTCGGCAAGAG 398 >seq123790 Length=336 Score = 327 bits (362), Expect = 2e-85 Identities = 230/261 (88%), Gaps = 1/261 (0%) Strand=Plus/Plus Query 32023 GCAATTAATACAGTATATAAAGAGCTTGGAATTCTAACGCCTCGAAAGGTAATCCAGTTA 32082 |||||||| || ||||||| ||| |||| | | |||| ||||| ||||||||||| ||| Sbjct 1 GCAATTAACACTGTATATACAGAAATTGGCAGTTTAACACCTCGCAAGGTAATCCAATTA 60 Query 32083 GAGGGTCTTCTGTCTAGAGAGCTATTCGGAAAGATAGCTAAATATGTATTTAATAAGTAT 32142 ||||||||||||||||||||||||||||| |||||||| || || || |||||||||||| Sbjct 61 GAGGGTCTTCTGTCTAGAGAGCTATTCGGTAAGATAGCGAAGTACGTCTTTAATAAGTAT 120 Query 32143 GAGTGGCCAGAAAGCCTAGATAGTGAAGTTGATCGAATTTATTTAGAATATCGCACTAAA 32202 || |||||||||||||||||| | ||||||| |||| ||||||||||||||||||||| Sbjct 121 GAATGGCCAGAAAGCCTAGAT-GAAGAGTTGATAGAATCTATTTAGAATATCGCACTAAA 179 Query 32203 GGTGAACTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATTTATATG 32262 ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 180 GGTAATCTAGGTCGTGATAAAGAAAGTGTTAAACGCACACTATATAAAGCGATGTCTATG 239 Query 32263 GGCTTGTAGCGGTTCGATTCC 32283 ||||||| ||||||| ||| Sbjct 240 GGCTTGTGAGGGTTCGACTCC 260 Score = 104 bits (114), Expect = 5e-18 Identities = 78/91 (86%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 32373 GGGTTCGACTCCCTTGTCAGTCGTTAGTCTGTCATGACTAGGTAACttttttttGACACT 32432 |||||||||||||| | | ||||||||||| |||||||| || |||||||||||| Sbjct 249 GGGTTCGACTCCCTCGCTCGCTGTTAGTCTGTCGTGACTAGGAAA---TTTTTTGACACT 305 Query 32433 CGCATCGCTGACAGACCGATGCACAAACCCA 32463 || ||||||||||||||||| |||||||||| Sbjct 306 CGTATCGCTGACAGACCGATACACAAACCCA 336 >seq119229 Length=828 Score = 269 bits (298), Expect = 6e-68 Identities = 307/392 (78%), Gaps = 19/392 (5%) Strand=Plus/Plus Query 21350 ATGAACAATTTAATCAATGTAACTTTAAATGAAAACCAAGAGCCAGTAGTTAGTGCAAGA 21409 |||||| | |||||||| ||||| ||||| ||||||||||| ||||||||||||||| || Sbjct 449 ATGAACGAATTAATCAACGTAACATTAAACGAAAACCAAGAACCAGTAGTTAGTGCACGA 508 Query 21410 CAGCTACA-TAAGAGCTTAGAGGTGAAAACTCGCTTTAGTCAATGGGTAGAACAAAATTT 21468 | | || |||| || | | | ||||||||| |||| |||||||| || |||||||| Sbjct 509 GATTTGCACAAAGAACTCA-AAATCAAAACTCGC-TTAGCCAATGGGTCGACCAAAATTT 566 Query 21469 TAAAATTCTAGAAGAAGGTTATGATTTTACAAGTGTAGTTGGAACTACGGTTGTAAAT-- 21526 |||| | | |||||| ||| ||||||| || |||||| |||||| |||| Sbjct 567 TAAAGCT-TTGAAGAAAATTACGATTTTAGCAGCGTAGTTATAACTACACAGCAAAATCA 625 Query 21527 -AATGGCGCAAATAGAAAATTGCAAGATTATGTACTATCTTTAGATGCTGCTAAAAATTT 21585 | |||| || || | || |||||||||| || ||| | || || ||| |||| Sbjct 626 GTACGGCGGAACTAAGCACTTACAAGATTATGCGCTGTCTCTTGACATGGCAAAACATTT 685 Query 21586 AGCAATGGTATCTAAAACCGACAAAGGAAAAGAAGTACGTC-AATACTTCATTCAAGTTG 21644 ||||||| | ||| ||| | | ||||| | ||||| |||| |||||||||||||||||| Sbjct 686 AGCAATGATGTCT-AAAGCAATAAAGGTCATGAAGTTCGTCAAATACTTCATTCAAGTTG 744 Query 21645 AAAAGGACTTCAAT-AGTCCAGAGAAAATCATGGCACGAGCTCTTAAAATCGCTGACAGA 21703 ||| ||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||| Sbjct 745 AAA--GACTTCAATAAGTCCAGAG-AAATCAT-GCACGAGCTCTT-AAATCGCTGACAG- 798 Query 21704 AAAATTGTC-AGTCTTGAACATAAAAACGAGG 21734 ||||||||| ||||||| |||| ||||||||| Sbjct 799 AAAATTGTCAAGTCTTG-ACAT-AAAACGAGG 828 Score = 165 bits (182), Expect = 2e-36 Identities = 129/153 (84%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 21268 ATATATCAATCACTTCAAATTCGTTTCTTCGCAAAACGAAGAAACAAATATTGAAAAATT 21327 |||||||||||| | ||| ||||||| ||||||||||||| || |||||||||||||||| Sbjct 55 ATATATCAATCATTACAATTTCGTTTGTTCGCAAAACGAACAAGCAAATATTGAAAAATT 114 Query 21328 TGAGGAGTAGAAAGGGTAATACATGAACAATTTAATCAATGTAACTTTAAATGAAAACCA 21387 |||||||||||||| |||||||||| |||||||| || || |||||||| ||||| || Sbjct 115 -GAGGAGTAGAAAGGACAATACATGAATAATTTAATTAACGTTACTTTAAACGAAAATCA 173 Query 21388 AGAGCCAGTAGTTAGTGCAAGACAGCTACATAA 21420 ||||| || ||| | |||||| ||||||| Sbjct 174 TGAGCCGGTTGTTTCTAGCAGACAGTTACATAA 206 >seq32415 Length=302 Score = 255 bits (282), Expect = 1e-63 Identities = 144/146 (99%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24862 AATCAGAACGTTCAAGAACACGCCTAAAATCGTCTGTAATCAATTTAAAAGTGTAGGTGG 24921 ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 302 AATCAGAACGTTCGAGAACACGCCTAAAATCGTCTGTAATCAATTTAAAAGTGTGGGTGG 243 Query 24922 TATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTTAAATTGAGAATTAGGG 24981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 TATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTTAAATTGAGAATTAGGG 183 Query 24982 GCATTCAAAACaaaaaaaGGAAGACA 25007 |||||||||||||||||||||||||| Sbjct 182 GCATTCAAAACAAAAAAAGGAAGACA 157 Score = 208 bits (230), Expect = 2e-49 Identities = 144/163 (88%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24330 GAAGACAGGACTTGGAACTACTAACGAACACGTTTACAAGTTTAAAACACAGCAAGACAA 24389 |||||||||||| ||||| || || ||||| ||||| | |||||||| | |||||||| Sbjct 163 GAAGACAGGACTGGGAACAACCAATGAACATGTTTATCAATTTAAAACTAAACAAGACAA 104 Query 24390 GAGGATGATGTTATGACTGAAACAGAAGTAAAAATAAAGCTCTTTGAGGACTACGAGCGC 24449 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 103 GAGGATGATGTTATGACTGAAACAGAAGTAAAAACAAAGCTCTTTGAGGACTATGAGCGC 44 Query 24450 ATTCATGGTCTTGTAGTATCAGAAGGGCACAAACAGAAAATGA 24492 |||||||| |||||| | ||| ||| |||||| |||||||||| Sbjct 43 ATTCATGGCCTTGTATTCTCACAAGAGCACAAGCAGAAAATGA 1 Score = 165 bits (182), Expect = 2e-36 Identities = 93/94 (99%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 24622 GTAGGTGGTATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTTAAATTGAG 24681 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 GTGGGTGGTATAAATTATCTAGTTACCACTTAAAAACGATAAGAGACCCCTTAAATTGAG 191 Query 24682 AATTAGGGGCATTCAAAACaaaaaaaGGAAGACA 24715 |||||||||||||||||||||||||||||||||| Sbjct 190 AATTAGGGGCATTCAAAACAAAAAAAGGAAGACA 157 >seq115959 Length=416 Score = 178 bits (196), Expect = 3e-40 Identities = 127/142 (89%), Gaps = 13/142 (9%) Strand=Plus/Minus Query 20945 CCATTTGTAAAAAATACAACCTTCAATCGTCTGATTTGTAT-GGCTTTTGATTTTTATTA 21003 ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| Sbjct 415 CCATTTGTAAAAA-TACAACCTT-AATCGTCTGATTTGTATTGGCTTTTGATTTT----- 363 Query 21004 CAACAAAACTTGGATTAAATTCAAGTTAGAAAGGAACAAGATGAACGAAATAGCAACAAA 21063 |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| Sbjct 362 ----AAAACTTGAATTAAATTCAAGTTAGAAAGGAACAATATGAACG-AATAGCAACAAA 308 Query 21064 TGATTTTGACTACTCTTTGCTC 21085 |||||||||||||||||||||| Sbjct 307 TGATTTTGACTACTCTTTGCTC 286 >seq125381 Length=275 Score = 80.6 bits (88), Expect = 6e-11 Identities = 183/271 (68%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 31724 TTGACAATGTGATTAAAGAGCGTTCTAAGTTATCACCCGCGACATTAGACGATATGCGTG 31783 |||| || ||| ||||||||||||| || ||||||| | ||||| ||||||||| ||| Sbjct 273 TTGATAACGTGGTTAAAGAGCGTTCGAA-CTATCACCTTCAACATTGGACGATATGAGTG 215 Query 31784 AGTATATCACGGATGGACTAGCTGACGACTTACAGGATTATCTATCAAAACACTGTTTT- 31842 ||||| | ||| | || |||| | ||||||| || ||||| || | ||| || | Sbjct 214 AGTATCTTACGAACGGCCTAGTGAATGACTTACGAGAGTATCTGGCAGAGAACTATTCTG 155 Query 31843 --AGTAGCTCCGTAAAGTGTCGGCCAGATACCGACAAGAGAAATGCTGGACTGCCTGAGG 31900 || || | || | | | ||||||| | || || || ||||| ||| || ||| Sbjct 154 ACAGAAG-TGGGTCA--TCTAAGCCAGATGCTGATAAAGCTAACGCTGGGCTGACTAAGG 98 Query 31901 AATTCTTTAAACAGTATTGCGAGGAAATCAAATCATTAAAAGCTAAATACCCAAACAGCT 31960 || | || | || | | |||||||| || |||| ||| | |||| ||| | Sbjct 97 AACTTTTCCGAGAGCTTCGAAAGGAAATCGAAGAGTTAAGAGCAGCACACCCTAACCGTA 38 Query 31961 TCACCGCTTACATCATGGATGTTAAAGGATG 31991 | | | || | ||||| || |||||||| Sbjct 37 ACGCAGAATATGTTATGGAAGTGAAAGGATG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105650672056200