Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq31280 196 5e-45 seq33108 127 2e-24 seq34305 109 6e-19 >seq31280 Length=10079 Score = 196 bits (216), Expect = 5e-45 Identities = 338/491 (69%), Gaps = 0/491 (0%) Strand=Plus/Minus Query 136355 CGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTATGTCTGGT 136414 |||||||| ||||| |||| || || || || |||| || ||||| ||||| || Sbjct 1778 CGTTTCTACGATGCGATTTCCACGTTTAAAATCTCCCTGCCGACGCCAATCATGTCGGGA 1719 Query 136415 GTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTGATAGTCTT 136474 || ||||| |||||||| |||||||| || || || | |||||| |||| || || || Sbjct 1718 GTGCGTACGCCAACCCGTCAGTTCAGCTCCTGTGTCCTGATTGAATGTGGCGACAGCCTG 1659 Query 136475 AATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTGCTGGTATT 136534 |||| || |||| || | | ||| ||||||| || | || || |||||| Sbjct 1658 GATTCCATCAACGCGACCTCCAGCGCTATTGTGAAATACGTTTCACAACGCGCAGGTATT 1599 Query 136535 GGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTGAAGTCAAG 136594 |||||||| ||||| || || || || ||| | |||||||| Sbjct 1598 GGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGCCCGATTCGCGGCGGTGAAGCTTTC 1539 Query 136595 CATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCATGCTCCCAA 136654 ||||| ||| ||| || |||| || |||||||| || || || || || || || || Sbjct 1538 CATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACAGCGGTGAAATCCTGTTCGCAG 1479 Query 136655 GGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGGAAGTTGAA 136714 ||||| |||||||| || ||||| || |||| |||||||||||||| ||||||| ||| Sbjct 1478 GGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTGGCATCTGGAAGTAGAA 1419 Query 136715 AACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCCATTTAGAT 136774 | ||| | || || || |||||| ||||| || | ||||| | || || | || Sbjct 1418 AGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCGCGTACGTCACATGGAC 1359 Query 136775 TATGGTGTTCAGATTAATAACCTGATGATTGAACGTTTGATTAAGAATGATTACATCACT 136834 || ||||| ||| | || || ||||| | || || | ||| || ||||||| Sbjct 1358 TACGGTGTGCAGCTCAACAAAATGATGTACCAGCGCCTGCTGAAGGGCGAGGACATCACG 1299 Query 136835 CTGTTTAGTCC 136845 |||||||| || Sbjct 1298 CTGTTTAGCCC 1288 >seq33108 Length=3479 Score = 127 bits (140), Expect = 2e-24 Identities = 132/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 47305 GAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCGGTT 47364 |||||||| |||||| | ||||||||||| |||| || ||||| || || || || Sbjct 2786 GAAGGCGGGCAGCACTTAAACGTTAACGTCCTGCGCCGTGAAACGCTGGAAGACGCCGTG 2845 Query 47365 GAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGCTTC 47424 | || || || || || ||||||||||| ||||| |||||||| || || |||||||| Sbjct 2846 AAACATCCTGAGAAGTATCCGCAGCTGACCATTCGTGTTTCCGGGTATGCCGTGCGCTTT 2905 Query 47425 AACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGA 47477 || || |||| || ||||| ||||| ||||| || || ||||| || || || Sbjct 2906 AATTCGCTGACGCCTGAACAACAGCGTGACGTCATTGCCCGTACCTTTACGGA 2958 >seq34305 Length=2218 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 47302 ATTGAAGGCGGTCAGCACCTGAACGTTAACGTGTTGCGTCGCGAAACCTTGCTGGATGCG 47361 ||||||||||| ||||| ||||| ||||||||| || || |||| ||| |||| || Sbjct 771 ATTGAAGGCGGCCAGCATCTGAATGTTAACGTGATGAACCGGGAAATGTTGATGGACGCA 712 Query 47362 GTTGAGCACCCAGAAAAATACCCGCAGCTGACTATTCGCGTTTCCGGATACGCGGTGCGC 47421 | || |||| || ||||| || ||| | || || |||||||| || || || || ||| Sbjct 711 ATGGATAACCCTGAGAAATATCCTCAGTTAACCATCCGCGTTTCGGGCTATGCCGTTCGC 652 Query 47422 TTCAACTCCTTGACACCAGAACAGCAGCGCGACGTTATCGCTCGTACTTTCACAGAGGCA 47481 || ||||| | || ||| ||||||| ||||| || | ||||| || || || || Sbjct 651 TTTAACTCGCTCACCAAAGAGCAGCAGCAGGACGTGATTACCCGTACCTTTACCCAGTCA 592 Query 47482 CTATA 47486 || || Sbjct 591 CTCTA 587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539018241784000