Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq45165 138 3e-28 seq95765 80.6 7e-11 >seq45165 Length=1800 Score = 138 bits (152), Expect = 3e-28 Identities = 439/676 (65%), Gaps = 5/676 (1%) Strand=Plus/Minus Query 641 GGTTACTTTGCTCCAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAA 700 || ||||| || || | |||||||||||||| || ||||| | || || ||||| ||| Sbjct 1510 GGCTACTTCGCGCCGAGCTATCCGCAGATCCGCGACATCTTCTATCCAACCATTGAGGAA 1451 Query 701 GTAGCTTTCGATTGGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTT 760 || || | ||| ||||| || || || | ||| || ||||| ||||| | || Sbjct 1450 GTGGCCTACGACTGGGGCCTGCGCACTCAGGTGGTTGAGTCGAACAAGGAAGTGCACCTG 1391 Query 761 TACTATGGCCGCCAATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACT 820 |||| ||| | || || | ||| || || ||||| || ||||| ||||| | Sbjct 1390 TACTCCGGCAAGAACTACCGCAACACGATCATCTGCCGGTCGATGGACAAGCCTGCGTCG 1331 Query 821 ATTGTAGGTTTTAAGATTGGTCATGCGCTGATTGATGAGCTTGATGTGATGACAAAGGTC 880 || || || || ||||| || | |||||| | || ||| | || | ||| ||| Sbjct 1330 ATCGTCGGCTTCAAGATCGGCCGGGCGCTGGTGGACGAGATCGACACGCTGAACAAGCGT 1271 Query 881 AAGGCTCAACAAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTG 940 ||||| || | |||||||| |||||||| || ||| |||| || | ||| || Sbjct 1270 AAGGCCCATGAGGCTTGGCGCAAGATCATCGCCCGTCTGCGCGTGAAGGCCGATGGCCTG 1211 Query 941 TTGAACGGTATTGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTCATGAGCAATTT 1000 |||||| || ||||| | || ||||| |||||||| || ||| | ||||| || Sbjct 1210 CAGAACGGCATCGATGTGACGACGACGCCTGAGGGCTTCAACTTCGTCTACGAGCAGTTC 1151 Query 1001 GTCAAAGAAGCAAACC-AAAGCGAGGCTAAGCGCGCTCTATATGGAATGATTCAAGCTTC 1059 | ||| | ||| | | | ||| | | || ||||||||| ||| || Sbjct 1150 CAC-CAGATCCCGACCGAGCACCCCGAAAAGGCCTCGCTCTATGGAATGGTTCGGGCCAG 1092 Query 1060 CACCTATGATAATGAAGCCAATCTTCCTGATGACTACATTGCATCATTGTTTGAGTCTTA 1119 |||||| || || |||| ||| || || || |||||||| | || |||| || | || Sbjct 1091 CACCTACGACAACGAAGTCAACCTGCCCGACGACTACATCCCGTCGCTGTTCGAAACCTA 1032 Query 1120 CCCACCTCAATTGATTTCAGCCTACTTAAAAGGGCAATTCGTAAATTTAACGAGTGGGGC 1179 ||| | || | | || || | | || | ||||| || | ||||| || | Sbjct 1031 CCCTACCCAGCTAGTCCTGGCGTATATCGATGGCGAGTTCGTCAACCTGACGAGCGGCTC 972 Query 1180 TGTATATCCAGACTTCGACCGGACCTTAAACCATACAGATGAG-GAAATAAGACCTAATG 1238 || || || ||||||||| | ||| | || | ||| || ||||| | | Sbjct 971 GGTCTACCCGACCTTCGACCGCCGGCTGAACAACACGAACGAGAGATCCAAGAC--GACG 914 Query 1239 AGGCTTTACTCATTGGTATGGACTTCAACGTCTTGAAGATGGCAGCTGTTGTTTATGTGA 1298 ||| | | | | || ||||||||||||||| |||| ||| | || | || |||| Sbjct 913 AGGAGCTGCACGTCGGCATGGACTTCAACGTCCTGAACATGACGGCCGAGATTGGGGTGA 854 Query 1299 TTCGAGATGGCAAGCC 1314 | || || ||| |||| Sbjct 853 TCCGCGACGGCGAGCC 838 >seq95765 Length=439 Score = 80.6 bits (88), Expect = 7e-11 Identities = 147/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 33280 TGAAAGCAATCGCTAAAGAATTTGATTGCGTTGTATTCGCTCTATCTCAGCTTAGCCG-C 33338 ||||||| | || |||||| | || ||| ||| |||| || || || || | ||| | Sbjct 270 TGAAAGCGCTGGCCAAAGAAATGGACTGCCCTGTTGTCGCGCTGTCACAACTGAACCGAC 211 Query 33339 AACTTAGAGAACAGACCTAACAAACGTCCAGTTAATGCTGATCTCCGCGAATCTGGCCAA 33398 | ||| |||| | | | | |||||||| ||||| |||||| ||||| || || Sbjct 210 AGCTT-GAGAGCCGCGCAGATAAACGTCCGAATAATGGTGATCTTCGCGATTCCGGGGCT 152 Query 33399 TTGGAGCAGGATGCGGACGTGATTCTATTCATTTACCGCGACGAAGTTTACGACAAGAAC 33458 | || ||||| || ||||| || | || || || ||||| || || || || | ||| Sbjct 151 CTTGAACAGGACGCTGACGTCATCGTTTTTATCTATCGCGATGAGGTCTATCACGAAAAC 92 Query 33459 TCAAAAGATGCAGGAACTGCTGAAATCATCATC 33491 || | ||| ||| ||||||||||||||| Sbjct 91 TCGGATGATAAAGGCGTCGCTGAAATCATCATC 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130073623554600