Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031107.1 Length=246291 Score E Sequences producing significant alignments: (Bits) Value seq28361 194 3e-44 seq60516 181 2e-40 seq43510 181 2e-40 seq2347 158 2e-33 seq51075 152 8e-32 seq74575 89.7 8e-13 seq58463 86.0 1e-11 seq47791 84.2 3e-11 >seq28361 Length=3781 Score = 194 bits (214), Expect = 3e-44 Identities = 227/304 (75%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||| |||||||||||| |||| | || | | | || |||| | ||| Sbjct 2732 ATGAAACAGTATCTGGACTTAATGCGCTACGTGCTGAACGAAGGCACACCAAAATCTGAC 2673 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 ||||||||||| ||||| || || |||| || | ||||||||| ||||| | || || Sbjct 2672 CGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGGAT 2613 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || ||||| |||||||| || |||||| || |||| || ||||| |||||||||||| Sbjct 2612 GGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGCTG 2553 Query 201971 TGGTTCCT-CATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTG 202029 ||||| || || ||| ||||||||||| || ||||||| ||||| ||| | ||||| Sbjct 2552 TGGTTTCTGCAAGGG-GACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATCTG 2494 Query 202030 GGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAG 202089 ||| || ||||| ||| | | || | | || ||||| ||||| || || |||||||| Sbjct 2493 GGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCGTAG 2434 Query 202090 CTGG 202093 |||| Sbjct 2433 CTGG 2430 Score = 178 bits (196), Expect = 2e-39 Identities = 235/321 (73%), Gaps = 4/321 (1%) Strand=Plus/Minus Query 202490 CTTTCTTGTCAGCTCTATCAGCGTAG-TGCGGACATGTTCCTTGGCGTACCGTTTAACAT 202548 || || |||||||| || |||||| |||| |||| ||||| || | ||||||||||| Sbjct 2258 CTCTCCTGTCAGCTTTACCAGCGTTCCTGCG-ACATTTTCCTGGGGCTGCCGTTTAACAT 2200 Query 202549 CGCGTCTTACGCCTTGCTGGTACACATGTTTGCACAACAG-GCGAACATGGCGGTAGGCG 202607 ||| || || ||||||| || ||| | || |||||| |||| | ||| ||| || | Sbjct 2199 CGCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATC-TGGAGGTCGGTG 2141 Query 202608 ACTTCGTCTGGACAGGTGGTGATACGCATCTGTACTCCAACCATCTGGAACAAGCTGACC 202667 |||| |||||||| || || |||||||| || ||| |||||| ||||| || || || Sbjct 2140 ACTTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCC 2081 Query 202668 TCCAACTTACCCGTGACCCTAAACCGTTACCGAAGTTGGTTATCAAACGTAAGCCCGATT 202727 | ||||| || || || || ||||||||||| |||| || ||||| ||||| | | Sbjct 2080 TGCAACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCT 2021 Query 202728 CCATCTTCGACTACAAATTCGAAGACTTCGAGGTTGTCGATTACATTTCGCATCCGGCGA 202787 | | || ||||| ||||| || || ||| ||| | |||| | ||||||| || | Sbjct 2020 CGCTGTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCA 1961 Query 202788 TTAAAGCGCCCGTCGCGATCT 202808 | |||||||| || ||| ||| Sbjct 1960 TCAAAGCGCCGGTTGCGGTCT 1940 >seq60516 Length=573 Score = 181 bits (200), Expect = 2e-40 Identities = 222/303 (73%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 201791 ATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCGAC 201850 |||||||| || || ||| | |||| |||| ||||| |||| | || | ||| Sbjct 32 ATGAAACAGTACCTCGACCTGATGCGCCATGTGCGCGAGCACGGCACCTTCAAGGAAGAC 91 Query 201851 CGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAGAA 201910 |||||||| || |||||| | || ||||| |||||||||||| ||| | || Sbjct 92 CGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCGCTTCAACCTGGCCGAT 151 Query 201911 GGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGCTG 201970 || || || | ||||||||||| ||| ||||| || ||||||||||| || ||| Sbjct 152 GGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCATGAACTACTG 211 Query 201971 TGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCTGG 202030 |||||||| |||||| ||||| ||| |||| |||| |||||| ||||| ||||||| Sbjct 212 TGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGTCAGCATCTGG 271 Query 202031 GACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTAGC 202090 ||||| ||||| || | ||||| || | |||||||| ||||| | || ||||| ||| Sbjct 272 GACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGGCTACCAGTGGCGCAGC 331 Query 202091 TGG 202093 ||| Sbjct 332 TGG 334 >seq43510 Length=3912 Score = 181 bits (200), Expect = 2e-40 Identities = 192/253 (76%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 201842 AAAGCCGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAAC 201901 ||| ||||||| ||||| || ||||| | | || ||||| | |||||||| || || Sbjct 1166 AAATCCGACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGAC 1107 Query 201902 TTACAAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCAT 201961 | | || || || || |||||||||||||| ||| | ||||| || || ||| | || Sbjct 1106 CTCAACGACGGCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCAC 1047 Query 201962 GAGCTGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTC 202021 ||| ||||||||||||| | ||| || ||||||||| ||| | || |||||||| ||| Sbjct 1046 GAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTC 987 Query 202022 ACCATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAA 202081 | |||||||||||| ||||| ||| | || || | |||||||||||||| ||||| Sbjct 986 AGCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAG 927 Query 202082 TGGCGTAGCTGGA 202094 ||||| |||||| Sbjct 926 TGGCGGCGCTGGA 914 >seq2347 Length=4848 Score = 158 bits (174), Expect = 2e-33 Identities = 218/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 201789 CCATGAAACAATATCTGGACTTACTGCGTGATGTTCGCGAAAACGGGGATGTAAAAGCCG 201848 |||||||||| || || ||| | |||| | || |||||| |||| | || || Sbjct 2125 CCATGAAACAGTACCTCGACCTGATGCGCCACGTGCGCGAACACGGCACCTTCAAGAGCG 2066 Query 201849 ACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGCCAGATGCGCTTTAACTTACAAG 201908 |||| ||||| || || ||| | || ||||| ||||||| | || || | | Sbjct 2065 ACCGCACCGGCACCGGGACCTACAGCGTCTTCGGCTACCAGATGAGATTCGACCTGGCCG 2006 Query 201909 AAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGCTGC 201968 | || ||||| |||||||||||||| || || || | || |||||||| || |||| Sbjct 2005 AGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACGAACTGC 1946 Query 201969 TGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCACCATCT 202028 |||||||||| ||| || ||||| |||| || |||| ||||| ||| |||||| Sbjct 1945 TGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGTCCATCT 1886 Query 202029 GGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGGCGTA 202088 ||||||||||||| || | |||||||| | || ||||| ||||| | || ||||| | Sbjct 1885 GGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGTGGCGCA 1826 Query 202089 GCTGG 202093 ||||| Sbjct 1825 GCTGG 1821 >seq51075 Length=376 Score = 152 bits (168), Expect = 8e-32 Identities = 186/250 (74%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 201847 CGACCGTACCGGTACGGGCACCCTCTCTGTTTTCGGACGC-CAGATGCGCTTTAACTTAC 201905 ||| || ||||| ||||| || || ||||| ||| ||||||||||| || | Sbjct 23 CGATCGCACCGGCGTCGGCACGCTGAGCGTCTTCGG-CGCGCAGATGCGCTTCGACCTCG 81 Query 201906 AAGAAGGTTTTCCGCTGGTCACCACCAAAAAGGTTCACCTTCGTTCAATCATCCATGAGC 201965 ||||| ||||| | |||| ||||| ||| | ||||| || || ||| | || ||| Sbjct 82 CCGAAGGCTTTCCCGTCCTCACGACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGT 141 Query 201966 TGCTGTGGTTCCTCATGGGTGACACCAACATCCAGTATTTGAAAGACAACAACGTCA-CC 202024 ||||||||||||| | ||| || ||||||||| ||| | || |||||||| |||| || Sbjct 142 TGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCC 201 Query 202025 ATCTGGGACGAATGGGCGGATAAAAACGGTGACTTAGGCCCGGTGTACGGTAAGCAATGG 202084 ||||||||||| ||||| ||| | || || | |||||||||||||| ||||| ||| Sbjct 202 ATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGG 261 Query 202085 CGTAGCTGGA 202094 || |||||| Sbjct 262 CGGCGCTGGA 271 >seq74575 Length=415 Score = 89.7 bits (98), Expect = 8e-13 Identities = 95/125 (76%), Gaps = 8/125 (6%) Strand=Plus/Plus Query 3987 GGTTACAGGTTCGAGTCCTGTAGTGGCTACCA--TTTTAAA------TTGTCTCGTAGCT 4038 |||| ||||||| |||||||| || |||| ||||||| ||||||| ||||| Sbjct 112 GGTTGCAGGTTCAAGTCCTGTGTGGGGCACCAAATTTTAAAGTACAATTGTCTCATAGCT 171 Query 4039 CAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTACTCGAGAC 4098 |||||||| ||| |||| ||||||| || | |||| | ||||||||| | | ||||| Sbjct 172 CAGTTGGTGGTAGCACTCGGCTGATAACCGAGCGGTCACTGGTTCAAGTCCAGTTGAGAC 231 Query 4099 AACCA 4103 ||||| Sbjct 232 AACCA 236 >seq58463 Length=386 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 4032 CGTAGCTCAGTTGGTTAGAGCGCTCGCCTGATAAGCGGGAGGTCGGTAGTTCAAGTCTAC 4091 ||||||||||||||||||||||| | ||||||||| | |||||||||||||| | ||||| Sbjct 151 CGTAGCTCAGTTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTAGTTCGAATCTAC 92 Query 4092 TCGAGACAACCA 4103 || | | |||| Sbjct 91 CCGGGCCCACCA 80 >seq47791 Length=2831 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 3577 AATATTTGTTCCTGTCGTCTAGTGGTCCAGGACACCTGGTTTTCAACCAGGCAACCGGAG 3636 |||| ||||||| ||||||||||||| ||||| |||| ||||| |||| |||||||| Sbjct 506 AATAATTGTTCCCATCGTCTAGTGGTC-AGGACGCCTGCCTTTCACGCAGGAAACCGGAG 564 Query 3637 TTCAATTCTCCGCAGGAACGC 3657 ||||| |||||| ||||||| Sbjct 565 TTCAAGTCTCCGTGGGAACGC 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786719739788000