Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031111.1 Length=53623 Score E Sequences producing significant alignments: (Bits) Value seq77134 125 2e-24 seq27079 87.8 6e-13 >seq77134 Length=829 Score = 125 bits (138), Expect = 2e-24 Identities = 176/247 (71%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 41673 GACTTCGGGAACCCGCTGCCGTAGAGCCAGGCGATGGAGTCACGAATCTCGAAGCCCGCG 41732 ||||| || | ||| ||||| | ||||||||| ||| || |||||||| || ||| Sbjct 709 GACTTAGGCATCCCAGACCCGTAAACCCAGGCGATCATGTCGCGGATCTCGAACCCGGCG 650 Query 41733 TCCTCGATGGCCACGGTCAGCCGGTGCCAGGTGCGGGAGCCGCCGAAGGCGAGCAGGTGC 41792 ||||||||| |||| || |||||| |||||||| |||| | || || |||||||| Sbjct 649 TCCTCGATGCGGACGGCCATGCGGTGCTGGGTGCGGGTGCCGGCAAACGCCAGCAGGTGG 590 Query 41793 CCACCGGGCTTGAGGACCCGCAGGCATTGCTCCCACATCTCG--ACATCGAAGGCGATAC 41850 || || |||||||| || |||||||| | |||| |||||| | | | | | || Sbjct 589 CCGCCAGGCTTGAGCACGCGCAGGCACTCAGCCCAAATCTCGGTGCTTGGCACGTCGTA- 531 Query 41851 CCGAGCCGTCCCACTTCTTGCCCATGAATCCCAGTTCGTAGGGTGGGTCGGTGACGATGG 41910 |||||| | | |||||||| |||| |||| || || ||||||||||| | Sbjct 530 -------GTCCCAGCGCCTACCCATGAACGCCAGGCCGTATGGCGGATCGGTGACGATTG 478 Query 41911 AGTCGAC 41917 | ||||| Sbjct 477 AATCGAC 471 Score = 91.5 bits (100), Expect = 5e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41198 GCCATGCTCCAGCACATTCGCAGCCACCGTGCCCGACAGCGGTTTCCGGGCCACTACGAT 41257 ||||||| ||||||| ||||| || || ||||| ||||| || || ||||| || ||| Sbjct 829 GCCATGCGCCAGCACGTTCGCCGCGACGGTGCCGGACAGAGGCTTGCGGGCGACGGTGAT 770 Query 41258 CGGCTCGAACGCGGGCTTGAGCGCCGTGCCCCAGC 41292 |||||| | ||||||||||| || |||||||||| Sbjct 769 CGGCTCCAGGGCGGGCTTGAGGGCGGTGCCCCAGC 735 >seq27079 Length=4003 Score = 87.8 bits (96), Expect = 6e-13 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 41153 CTCGTCTGTTGCGATGCGGCAGGCGTCGATGTTCAGCGCGCCGGTGCCATGCTCCAGCAC 41212 ||| ||||| | || ||||| |||| || || | | |||| ||||| || |||| || Sbjct 1294 CTCATCTGTCGGGACACGGCATCCGTCTATATTTAACCCGCCTGTGCCGTGTGCCAGTAC 1235 Query 41213 ATTCGCAGCCACCGTGCCCGACAGCGGTTTCCGGGCCACTACGATCGGCTCGAACGCGGG 41272 || || || || |||| ||||||||| ||||| || ||| |||||| |||||| Sbjct 1234 GTTACTTGCGACAGTACCCGCCAGCGGTTTACGGGCAACGCAGATAGGCTCGTGCGCGGG 1175 Query 41273 CTTGAGCGCCGTGCCCCAGCCCTGCCACTGCTTTGCGGCGT 41313 || | || ||||||||||| | ||| || || ||| ||| Sbjct 1174 TTTTAAGGCAGTGCCCCAGCCTTCCCATTGTTTGGCGCCGT 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171206679231000