Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031126.1 Length=244840 Score E Sequences producing significant alignments: (Bits) Value seq28361 159 5e-34 seq60516 134 2e-26 seq43510 118 2e-21 seq51075 109 9e-19 seq2347 104 4e-17 seq74575 91.5 2e-13 >seq28361 Length=3781 Score = 159 bits (176), Expect = 5e-34 Identities = 229/323 (71%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 200838 GCTTTCCTGTCAGCTGTATCAGCGTAGCGCTGATATGTTTTTAGGCGTGCCGTTCAACAT 200897 ||| ||||||||||| || |||||| | || || || | || ||||||| ||||| Sbjct 2259 GCTCTCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACAT 2200 Query 200898 TGCATCATACGCACTACTGATTCACATGGTAGCCCAACAGGTCAATATGACTGTCGGTGA 200957 || || || || ||| | || ||||| || |||||| | || || |||||||| Sbjct 2199 CGCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGA 2140 Query 200958 TTTCGTATGGACGGGTGGTGACGTACACATCTACAGCAATCACGAAGAGCAGGTTCGTCT 201017 || || ||||| || || || ||| | |||||||| ||| ||||||| || || Sbjct 2139 CTTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCT 2080 Query 201018 GCAACTGTCTCGTGATCCGCGTCCTTTACCGAAGTTGAAAATTCTTCGTAAGCCGGACTC 201077 ||||||| | || || |||||| | ||||||||| || ||| || ||||| | ||| Sbjct 2079 GCAACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTC 2020 Query 201078 TATCTTCGATTACAAGTTCGAAGACTTTGAGCTTACTGGTTACGAACCGCATCCTGCGAT 201137 | || || || ||||| || |||||| || |||||||| |||||||| || || Sbjct 2019 GCTGTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCAT 1960 Query 201138 AAAAGCACCGGTGGCGATATGAA 201160 ||||| ||||| ||| | |||| Sbjct 1959 CAAAGCGCCGGTTGCGGTCTGAA 1937 Score = 138 bits (152), Expect = 2e-27 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 200098 GACCGTACCGGTANNNNNACCACGTCTATTTTCGGTGCACAGATGCGCTTCAATCTACAA 200157 ||||||||||||| || || ||||| ||| |||||||| || ||||| || Sbjct 2675 GACCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAG 2616 Query 200158 GACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCACGAGCTG 200217 || ||||| || |||| ||||| || ||||||||| | || ||||||||||| |||||| Sbjct 2615 GATGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTG 2556 Query 200218 TTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGTCACCATT 200277 ||||||| || | || |||||||| || || ||||| || ||||||||| | || Sbjct 2555 CTGTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATC 2496 Query 200278 TGGGACGAATGGGC 200291 ||||| || ||||| Sbjct 2495 TGGGATGAGTGGGC 2482 >seq60516 Length=573 Score = 134 bits (148), Expect = 2e-26 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 200092 AAGAAAGACCGTACCGGTANNNNNACC-ACGTCTATTTTCGGTGCACAGATGCGCTTCAA 200150 ||| ||||||||||||| | ||| || | | |||||| |||||||||||||| Sbjct 83 AAGGAAGACCGTACCGGCACCGGCACCTACAGCG-TGTTCGGTTACCAGATGCGCTTCAA 141 Query 200151 TCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTCCGTTCCATCATTCA 200210 || || |||||||| | || || |||||||||||||| || |||||||| || Sbjct 142 CCTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCATCATCCA 201 Query 200211 CGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTGAACGATAACAATGT 200270 || || |||||||||| | ||||| |||||||||||||| ||||| || ||| || Sbjct 202 TGAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAACGGCGT 261 Query 200271 CACCATTTGGGACGAATGGGC 200291 || ||| |||||||| ||||| Sbjct 262 CAGCATCTGGGACGAGTGGGC 282 >seq43510 Length=3912 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||||| ||| | || | ||||||||||| |||| || ||||||||| || || Sbjct 1121 CAGATGCGTTTCGACCTCAACGACGGCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTG 1062 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 || || ||| | |||||| || |||||||||| || || || ||||| ||| ||||| Sbjct 1061 CGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTC 1002 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 || || ||||| |||| ||| |||||||| ||||| Sbjct 1001 AAGGACAACAAGGTCAGCATCTGGGACGAGTGGGC 967 >seq51075 Length=376 Score = 109 bits (120), Expect = 9e-19 Identities = 124/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 200128 TTCGGTGCACAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAG 200187 ||||| || |||||||||||| | || || ||||| || | | |||||||||||| Sbjct 54 TTCGGCGCGCAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCGTCCTCACGACCAAGAAG 113 Query 200188 TGCCATCTCCGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATC 200247 || || || || ||| | |||||| || |||||||||| || || || ||||| ||| Sbjct 114 CTGCACCTGCGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATC 173 Query 200248 AAGTATCTGAACGATAACAATGTCA-CCATTTGGGACGAATGGGC 200291 ||||| || || ||||| |||| |||| |||||||| ||||| Sbjct 174 GCCTATCTCAAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGC 218 >seq2347 Length=4848 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 200137 CAGATGCGCTTCAATCTACAAGACGGCTTCCCATTGGTGACGACCAAGAAGTGCCATCTC 200196 |||||| | ||| | || || ||||| || |||| || |||||||| |||||||| Sbjct 2027 CAGATGAGATTCGACCTGGCCGAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTG 1968 Query 200197 CGTTCCATCATTCACGAGCTGTTGTGGTTCCTTAACGGTGACACCAATATCAAGTATCTG 200256 | |||||||| ||||| ||| |||||||||| | || || ||||||||| || ||| Sbjct 1967 AGATCCATCATCCACGAACTGCTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTG 1908 Query 200257 AACGATAACAATGTCACCATTTGGGACGAATGGGC 200291 || || || || |||| |||||||||||||| Sbjct 1907 AAGGACAATGGCGTGTCCATCTGGGACGAATGGGC 1873 >seq74575 Length=415 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3209 ATTGTCTCGTAGCTCAGTTGGTCAGAGCGCTCGCCTGATAAGCGGGAGGTCAGTGGTTCA 3268 |||||||| ||||||||||||| ||| |||| ||||||| || | ||||| ||||||| Sbjct 158 ATTGTCTCATAGCTCAGTTGGTGGTAGCACTCGGCTGATAACCGAGCGGTCACTGGTTCA 217 Query 3269 AGTCCACTCGAGACAACCAA 3288 |||||| | ||||||||||| Sbjct 218 AGTCCAGTTGAGACAACCAA 237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782084102400000