Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq28361 228 1e-54 seq43510 217 2e-51 seq60516 181 2e-40 seq51075 165 1e-35 seq2347 161 2e-34 seq34332 96.9 5e-15 >seq28361 Length=3781 Score = 228 bits (252), Expect = 1e-54 Identities = 231/298 (78%), Gaps = 2/298 (1%) Strand=Plus/Minus Query 196014 ATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGT-CACGAGAAAGCTGA 196072 |||||||||||| |||| || |||| | |||| |||||||||| ||| | ||| |||| Sbjct 2732 ATGAAACAGTATCTGGACTTAATGCGCTACGTGCTGAACGAAGGCACACCA-AAATCTGA 2674 Query 196073 CCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAA 196132 ||||||||| || ||||| | || ||||| || | |||||||||||| | |||| | Sbjct 2673 CCGTACCGGTACAGGCACGCTTTCAATTTTTGGTCACCAGATGCGTTTTAATCTGCAGGA 2614 Query 196133 AGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTT 196192 || || || |||||||| || ||||||| || | || || ||||| || || ||| | Sbjct 2613 TGGCTTTCCCCTGGTCACGACTAAAAAGTGCCATGTTCGCTCCATCATTCATGAGCTGCT 2554 Query 196193 GTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTG 196252 |||||| ||| | || ||||||||||| || |||||||| ||||| ||| |||||| Sbjct 2553 GTGGTTTCTGCAAGGGGACACCAACATTGGTTACCTGAAAGAAAACAATGTCTCTATCTG 2494 Query 196253 GGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCGT 196310 |||||||||||||||||| | ||| |||| || || || ||||| || ||||||||| Sbjct 2493 GGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGGCGT 2436 Score = 156 bits (172), Expect = 6e-33 Identities = 234/329 (71%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 196749 CTGTCCTGTCAGCTTTACCAGCGCAG-TGCAGACGTCTTCCTCGGTGTCCCGTTCAACAT 196807 || |||||||||||||||||||| ||| ||| | ||||| || | ||||| ||||| Sbjct 2258 CTCTCCTGTCAGCTTTACCAGCGTTCCTGC-GACATTTTCCTGGGGCTGCCGTTTAACAT 2200 Query 196808 CGCTTCGTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCAATATGGTGGCGGGTGA 196867 ||| || || ||| |||| || ||||| || || ||| | || ||| || ||||| Sbjct 2199 CGCCAGCTATGCGCTGCTGGTGCATATGGTCGCGCAACAGTGCGATCTGGAGGTCGGTGA 2140 Query 196868 TTTCGTCTGGACGGGCGGCGATACCCATCTGTACTCTAACCATCTGGAACAGGCCACGTT 196927 || |||||||| ||||||||||| || || ||| ||||| ||||| ||||| | Sbjct 2139 CTTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGGCGCGCCT 2080 Query 196928 GCAGCTCTCCCGTGTACCGCATGATCTGCCTAAGCTCGTTATCAAACGTAAACCGGATTC 196987 ||| || | || | ||||| || | || ||||| || || ||||| || || | || Sbjct 2079 GCAACTGACGCGCGAACCGCGTGCGTTACCGAAGCTGGTGATTAAACGCAAGCCTGCCTC 2020 Query 196988 CATTTTCGACTATAAGTTCGAAGATTTTGAAATCGTGGGTTACGAAAGCCACCCACCCAT 197047 | || |||||| ||||| |||||||| || | |||||||| || || |||| Sbjct 2019 GCTGTTTGACTATCGTTTCGACGATTTTGAGATTGAAGGTTACGATCCGCATCCCGCCAT 1960 Query 197048 TAAGGCACCGGTTGCCATCTAAGGAACAC 197076 || || |||||||| ||| |||||| Sbjct 1959 CAAAGCGCCGGTTGCGGTCT---GAACAC 1934 >seq43510 Length=3912 Score = 217 bits (240), Expect = 2e-51 Identities = 225/295 (76%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 196015 TGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGAAGGTCACGAGAAAGCTGACC 196074 |||| ||||| |||| || |||| |||| || | | || |||||| | |||| Sbjct 1216 TGAAGCAGTACCTGGACCTGCTGCAGCACGTGCTGGAGCATGGCGCGGAGAAATCCGACC 1157 Query 196075 GTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGCAAAG 196134 | |||||||| ||||| | | ||||| | ||||||||||| ||||| | | | Sbjct 1156 GCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGTTTCGACCTCAACGACG 1097 Query 196135 GGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTGTTGT 196194 | ||||| |||||||||||||| ||| |||||||||| || ||| | ||||| || ||| Sbjct 1096 GCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTGT 1037 Query 196195 GGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATCTGGG 196254 |||||||||| ||||| ||||||||| ||||| || |||||||| ||||| ||||||| Sbjct 1036 GGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGGG 977 Query 196255 ATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 | |||||||| |||| | ||||| || ||||| || ||||| ||||||||||| Sbjct 976 ACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCG 922 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/172 (72%), Gaps = 7/172 (4%) Strand=Plus/Minus Query 196754 CTGTCAGCTTTACCAGCGCAGTGCAGACGTCTTCCTCGGTGTCCCGTTCAACATCGCTTC 196813 ||| ||||| ||||||||||| | ||| | ||||| || || |||||||||||||| Sbjct 738 CTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCCAG 679 Query 196814 GTACGCTCTGTTGGTTCACATGGTGGCACAGCAGGTCA---ATATGGTGGCGGGTGATTT 196870 ||||| ||| || ||||||||||| ||||| || ||| | ||| ||||| Sbjct 678 CTACGCGCTGCTGACCCACATGGTGGC---GCAGGCCACCGGCCTGGGCGTGGGCGATTT 622 Query 196871 CGTCTGGACGGGCGGCGATACCCATCTGT-ACTCTAACCATCTGGAACAGGC 196921 ||| ||| |||||| | || |||| |||| ||||| | |||||||| Sbjct 621 CGTGCACACGCTGGGCGATGCGCACCTGTAACTCCAACCACTTCGAACAGGC 570 >seq60516 Length=573 Score = 181 bits (200), Expect = 2e-40 Identities = 230/312 (74%), Gaps = 6/312 (2%) Strand=Plus/Plus Query 196001 AGGTAACTGGCTGATGAAACAGTATTTGGAATTGATGCACACCGTGTTGAACGA--AGGT 196058 ||| | ||| |||||||||||||| | || |||||| | | ||| | ||| | | Sbjct 19 AGGGAGCTGCCTGATGAAACAGTACCTCGACCTGATGCGC--CATGT-GCGCGAGCACGG 75 Query 196059 CACGAGAAAGCT-GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCG 196117 ||| ||| |||||||||||||| |||||| | | ||||| || |||||||| Sbjct 76 CACCTTCAAGGAAGACCGTACCGGCACCGGCACCTACAGCGTGTTCGGTTACCAGATGCG 135 Query 196118 TTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTAT 196177 || ||||| | | || ||||| | ||||||||||| |||| |||||| || || Sbjct 136 CTTCAACCTGGCCGATGGCTTCCCCATCGTCACCACCAAGAAGTGCCACCTGAAGTCCAT 195 Query 196178 CATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAA 196237 |||||| ||||| ||||||||||| | || || ||||| ||| |||| ||||| ||||| Sbjct 196 CATCCATGAACTACTGTGGTTCCTGCAGGGTGATACCAATATCAAGTACCTGAAGGACAA 255 Query 196238 CAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGG 196297 | |||||| |||||||| |||||||| || || | ||| | || ||||| || ||||| Sbjct 256 CGGCGTCAGCATCTGGGACGAGTGGGCCGACGAGAACGGCAACCTCGGCCCGGTATACGG 315 Query 196298 TAAGCAGTGGCG 196309 | |||||||| Sbjct 316 CTACCAGTGGCG 327 >seq51075 Length=376 Score = 165 bits (182), Expect = 1e-35 Identities = 158/201 (79%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 196110 CAGATGCGTTTTGACCTGCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTG 196169 |||||||| || ||||| | |||| || || | |||| ||||| ||| |||||||| Sbjct 63 CAGATGCGCTTCGACCTCGCCGAAGGCTTTCCCGTCCTCACGACCAAGAAGCTGCACCTG 122 Query 196170 CGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTG 196229 || || ||| | ||||| || ||||||||||||| ||||| ||||||||| ||||| Sbjct 123 CGCTCGATCGTGCACGAGTTGCTGTGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTC 182 Query 196230 AAAGACAACAACGTCAG-TATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCC 196288 || |||||||| ||||| |||||||| |||||||| |||| | ||||| || ||||| Sbjct 183 AAGGACAACAAGGTCAGCCATCTGGGACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCC 242 Query 196289 CGTCTACGGTAAGCAGTGGCG 196309 || ||||| ||||||||||| Sbjct 243 GGTGTACGGCAAGCAGTGGCG 263 >seq2347 Length=4848 Score = 161 bits (178), Expect = 2e-34 Identities = 179/239 (75%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 ||||| |||||||| || ||| | | ||||| || |||||| | || |||||| | Sbjct 2066 GACCGCACCGGCACCGGGACCTACAGCGTCTTCGGCTACCAGATGAGATTCGACCTGGCC 2007 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 | || || || |||||||||||||| || | || ||| |||| ||||||||||||||| Sbjct 2006 GAGGGCTTTCCCCTGGTCACCACCAAGAAATGCCATCTGAGATCCATCATCCACGAACTG 1947 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 ||||||||||| | ||||| ||||| |||| || ||||| ||||| ||| ||| Sbjct 1946 CTGTGGTTCCTGCAGGGCGAGACCAATATCCGCTACCTGAAGGACAATGGCGTGTCCATC 1887 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGGCG 196309 ||||| || ||||| || || | || || || || || |||||||| | |||||||| Sbjct 1886 TGGGACGAATGGGCCGACGAGAACGGTGAGCTGGGACCGGTCTACGGCTACCAGTGGCG 1828 >seq34332 Length=487 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 |||||||||||||| |||||||||| ||||||||||||| |||||| | ||||||||||| Sbjct 357 CTCTGTAGTTCAGTCGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAGTCC 298 Query 5547 TGCCAGAGTCGCCACATT 5564 | ||||| |||| ||| Sbjct 297 AGTCAGAGGAGCCAGATT 280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 769052562148000