Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq28361 179 1e-40 seq100385 147 8e-31 seq43510 127 8e-25 >seq28361 Length=3781 Score = 179 bits (198), Expect = 1e-40 Identities = 289/413 (70%), Gaps = 2/413 (0%) Strand=Plus/Minus Query 51924 ATTTGGGACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGG 51983 || ||||| || ||||| ||||| | || || ||||| || || || || || |||||| Sbjct 2498 ATCTGGGATGAGTGGGCAGATGAGCAGGGCAATCTGGGACCGGTATACGGCAAACAGTGG 2439 Query 51984 CGTAGTTGGGATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCA 52043 ||||| |||| | | | ||| | | || ||||||||| |||| | || Sbjct 2438 CGTAGCTGGGGCACCGCCCGTGGCGAAGAGATTGATCAGATCACCAAAGTGATTGAACAG 2379 Query 52044 ATTAAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTG 52103 || ||| |||||| ||| || || ||||||||| || ||||| ||||| || || Sbjct 2378 ATCAAGCGCGATCCGGATTCCCGCCGCATCATTGTCTCGGCGTGGAACGTGGGCGAACTG 2319 Query 52104 GATGATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAG 52163 ||||| |||||| ||||||| |||||| | | ||||| ||||| || || || || | | Sbjct 2318 GATGAAATGGCGCTGGCTCCGTGCCATGCCTTTTTCCAGTTCTACGTCGCGGATGGCAGG 2259 Query 52164 CTTTCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATT 52223 || || || || | || ||||| || |||||| ||| |||| | ||||||||||| Sbjct 2258 CTCTCCTGTCAGCTTTACCAGCGTTCCTGCGACATTTTCCTGGGGCTGCCGTTTAACATC 2199 Query 52224 GCCAGCTATTCCTTGCTGACGCATCTGATTGCTCGAGCAGT-TGGCCTTGATGTTGGTGA 52282 ||||||||| | ||||| |||| || | || | | |||| | || || || ||||| Sbjct 2198 GCCAGCTATGCGCTGCTGGTGCATATGGTCGCGC-AACAGTGCGATCTGGAGGTCGGTGA 2140 Query 52283 ATTCATTTGGACTGGTGGCGACGTCCATATCTACAACAACCATGTAGATCAGG 52335 || | ||||| || ||||| || | |||| |||||| | || |||| Sbjct 2139 CTTTGTCTGGACCGGCGGCGATACGCACCTTTACAGCAACCACCTGGAGCAGG 2087 >seq100385 Length=621 Score = 147 bits (162), Expect = 8e-31 Identities = 378/564 (67%), Gaps = 29/564 (5%) Strand=Plus/Minus Query 4883 GAGAATGCTCCGGCTTCTCGTAAT-GACATTCTAGCTAAGCGTTTTGGTATTCCCATGGA 4941 ||||| |||||||| | || || || ||||| ||||||||||| || ||||| ||||| Sbjct 603 GAGAAGGCTCCGGCCGCACGCAAACGATATTCTGGCTAAGCGTTTCGGCATTCCGATGGA 544 Query 4942 AGGTCTA-ACATACTTCTTCACGTATGACGAGATCCAACCACAGACTCCACGTCGATCAC 5000 || || ||||||| ||||||||| ||||||| | ||| |||| | | || | Sbjct 543 GGGGGTACACATACTACTTCACGTACGACGAGACGCTACCGCAGA----AAG-CGGCTGC 489 Query 5001 ATGCATTCTCAAAAATGCCTTGCGCTATGGGCGCTGACCTTTCTCAAGGTGATGACTTCT 5060 | ||| || ||||| ||||| | || || ||| | || || || || ||||||| Sbjct 488 AGAACTTCGACAAGATGCCGTGCGCGCTTGGTGCAGACTTGTCGCAGGGGGACGACTTCT 429 Query 5061 GCGCATTTACATTCCTGTTTCCTCTAG-------------GTAACGATA--CTTTCGGCA 5105 |||| || || |||||||| || || | | | ||| | | ||||| Sbjct 428 GCGCGTTCACCTTCCTGTTCCCGCTCGACTCAGTGATCCAGCATCGAGAACGCTACGGCA 369 Query 5106 TCAAGACACGAAGTTACATTACTGAACTAACATTGATGAAACTTCCTGGAGCCATGCGCT 5165 |||| || ||||| || ||||| || || || | ||||| || ||||| ||| ||| Sbjct 368 TCAAAACTCGAAGCTATATTACCGAGCT-ACGCTCATGAAGCTGCCTGGCGCCGCTCGCG 310 Query 5166 TCAAATATGAAGAATTTATTAAAGAGGGAACACTTCAGGTGCTTAATGGTACCGTTCTCG 5225 ||| ||| |||| || || || || || | || | || | || | || | Sbjct 309 CCAAGTATCAAGAGTTCATCAACGAAGGTAGTCTCATTATCCTGGACGGCGCTACGCTGG 250 Query 5226 ACATGATGGAAGTCTACGAAGATCTCGACAATCATAT-TCTCGAAATGGAGTATGATGTT 5284 ||||||||| |||||||| || || || | | |||| || || |||| || Sbjct 249 ACATGATGGTGGTCTACGACGACCTTGAGAGT-ATATCGATCACCAT-CAGTACGACACC 192 Query 5285 CGAGCATTTGGTTATGACCCATACAATGCAGATCAGTTCGTC-AAGCGTTGGATCGCTGA 5343 | || |||| |||||||| ||||| || | | || ||| | || ||| | | || Sbjct 191 CTGGCGCTTGGGTATGACCCTTACAACGCCAAAGAATTTGTCGCACGGTGGGAGCTC-GA 133 Query 5344 GAATGGACCATTTGGTGTTCAGAAAGTTATTCAGGGTGTTCGAACAGAATCGGTTCCTCT 5403 ||| ||||| | || | |||| |||||||||||||| || || ||||| ||||| | Sbjct 132 GAACGGACCCTACGGAATCGAGAAGGTTATTCAGGGTGTGCGCACTGAATCCGTTCCGTT 73 Query 5404 TGGCGAATTGAAGAATCTCAGTGA 5427 |||||| | ||| | || ||||| Sbjct 72 GGGCGAACTCAAG-AGCTGAGTGA 50 >seq43510 Length=3912 Score = 127 bits (140), Expect = 8e-25 Identities = 293/440 (67%), Gaps = 6/440 (1%) Strand=Plus/Minus Query 51810 GGCTTCCCGCTCATCACCACCAAGAAGGTGCATTTCCCATCAGTGGTCGGGGAGTTGCTG 51869 |||||||| || |||||||||||||| |||| | | || | || ||||||||| Sbjct 1097 GGCTTCCCCCTGGTCACCACCAAGAAGCTGCACCTGCGCTCGATCGTGCACGAGTTGCTG 1038 Query 51870 TGGTTGCTTTCGGGCTCTACGAACGTCAACGATCTCCATAAGTACGGCGTCAGCATTTGG 51929 ||||| || |||| || ||| || | ||||| | | || |||||||| ||| Sbjct 1037 TGGTTCCTGAAGGGCGAGACCAACATCGCCTATCTCAAGGACAACAAGGTCAGCATCTGG 978 Query 51930 GACGAATGGGCGGATGAAAATGGTAACCTGGGTCCTGTGTATGGTAAGCAGTGGCGTAGT 51989 ||||| ||||| |||| | || | || || || ||||| || ||||||||||| | Sbjct 977 GACGAGTGGGCCGATGCGCAGGGCGAACTCGGCCCGGTGTACGGCAAGCAGTGGCGGCGC 918 Query 51990 TGG---GATGCTGGTGGCGGCAAGGTCATCGATCAGATCCATGAAGTCGTCAAATCAATT 52046 ||| | || | ||| || || ||||| ||||| || | || | || Sbjct 917 TGGACCGGCGCCGACGGCCGCGAG---ATCGACCAGATGCAGTGGCTGGTGGACGAGATC 861 Query 52047 AAGAACGATCCTGATAGTCGACGGCACATTGTCTCTGCTTGGAATGTGGGTGATTTGGAT 52106 ||| | |||| ||| || |||| | || || ||||| |||| || || Sbjct 860 AAGCGCAATCCGGATTCGCGGCGGCTGGTGATCAGCGCCTGGAACGTGGCCGAACTGCCG 801 Query 52107 GATATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTT 52166 | |||||| || || ||||| | || ||||| ||||| || | || || ||||| Sbjct 800 CAGATGGCGCTGATGCCGTGCCACAGCCTGTTCCAGTTCTACGTGGTCGACGGCAAGCTC 741 Query 52167 TCGTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCC 52226 ||||| |||| ||||| | |||||| ||| ||||||| ||||| ||||| ||| Sbjct 740 AGCTGCCAGCTGTACCAGCGCAGCGGCGACATTTTCCTGGGCGTGCCGTTCAACATCGCC 681 Query 52227 AGCTATTCCTTGCTGACGCA 52246 ||||| | ||||||| || Sbjct 680 AGCTACGCGCTGCTGACCCA 661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189801862083000