Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031228.1 Length=60606 Score E Sequences producing significant alignments: (Bits) Value seq40328 190 8e-44 seq60383 179 1e-40 seq98424 113 2e-20 seq76547 111 6e-20 seq129722 93.3 2e-14 >seq40328 Length=627 Score = 190 bits (210), Expect = 8e-44 Identities = 396/582 (68%), Gaps = 6/582 (1%) Strand=Plus/Minus Query 17451 AAAGAGCCGCTTGTCGTCAGCTTTTCCGGCGGCCAGTCGTCCGGCTTTCTTTGTGCATAC 17510 || ||||| | || ||||| ||||| || || ||||| || | || || || | | | Sbjct 609 AAGGAGCCAATGGTTGTCAGTTTTTCAGGAGGTCAGTCATCGGCGTTACTGTGCGATTTC 550 Query 17511 CTGATCGAGAACTACGGCCACAAATATGACCTGCATTTCGTGTTCGCCAATACTGGCCGG 17570 || | | |||||| | || ||| | || || || || || || || ||||| Sbjct 549 CTTTTGCAAAACTACTCGGATGCTTACGACTTTCACTTTGTTTT-GCGAACACGGGCCGC 491 Query 17571 GAGCACGAAGAAACGCTGATATTCGCCGACAAGGTGGACAAACATTTCGGCCTGAATCTG 17630 || || ||||| | || || || || ||||| || |||| ||| ||||| |||||| Sbjct 490 GAACATCCCGAAACTTTAATTTT-GCTGATAAGGTCGATAAACTTTTTGGCCTTAATCTG 432 Query 17631 GTTTGGCTGGAAGG-GTACGCCAGTCCGGAACACGGCGTGGGGATGCGCCACCGGGTCGT 17689 |||||||| ||||| ||| | || || || ||||| || || ||| ||| | || Sbjct 431 GTTTGGCTTGAAGGCGTAA-CAAGCCCCGAGCACGGTGTTGGTATGTCACACAAAATAGT 373 Query 17690 CAGTTTCGAGACGGCCGCGAGGAACGGCGAACCATTTGAAAGCCTGATAAGCGTCGAGGG 17749 || || || || || ||||||||||||| ||||||||| || ||||| ||||| || Sbjct 372 CACATT-GAAACAGCATCGAGGAACGGCGAGCCATTTGAACAACT-ATAAGTGTCGAAGG 315 Query 17750 CATCCCGAATATTTCCCGCCAGAAGTGCAGCGACTACCTGAAAACGCAGACGATTCGCCA 17809 || || || | ||||| ||||| ||||| || || | || || || || || | Sbjct 314 AATACCTAACGTATCCCGTCAGAAATGCAGTGATTATTTAAAGACTCAAACAATCAGATC 255 Query 17810 TTGGATGCGAAGCAATGGTCTGGCGCGCCGGGGGTGGAGCGCAAAGACGGCCATCGGGAT 17869 |||||||| || || || | | || ||| || || || || || || || Sbjct 254 ATGGATGCGGGCTAACAACCTAGCCAGGCATGGCTGGTCTGCCAAAACCGCAATAGGCAT 195 Query 17870 GCGGTCAGACGAACCAGACCGGGCTAACCCGAACAAAGCGTCGGCCAAGAAATTCAATCT 17929 ||| | ||||| || || || || | | || ||||| | ||| || ||| | Sbjct 194 GCGCGCTGACGAGCCCGAGCGCGCAGCAATGGATAAGGCGTCCACTAAGCGATACAACTT 135 Query 17930 GGTCTATCCGCTTTGCCATTGGGGGAGTTTCGATAAGCAGGACGTGAACGATTATTGGGA 17989 ||| ||||| | || || ||||| ||| ||||||||||| || || |||| |||||| Sbjct 134 GGTATATCCATTGTGTCACTGGGGTTCTTTTGATAAGCAGGATGTAAATGATTTTTGGGA 75 Query 17990 TGCCATGCCGTTCAAACTCAACATCCCGCCGCATTACGGGAA 18031 ||| ||||| |||||||| || ||||| | |||||||| || Sbjct 74 TGCAATGCCATTCAAACTGAATATCCCCTCTCATTACGGAAA 33 >seq60383 Length=344 Score = 179 bits (198), Expect = 1e-40 Identities = 201/266 (76%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 43072 CAGCCTGCGCCGCCATCCATTCCCACGTATTTTCGTGCATGGCGCGGTGTTTCATCAGCA 43131 |||||||||||| | | |||||||| || |||||||||| || ||||| ||||| |||| Sbjct 262 CAGCCTGCGCCGTCCTGCATTCCCATGT-GTTTCGTGCATCGCACGGTGCTTCATAAGCA 204 Query 43132 GATATGCGATGACACGGTCGCGGCGCTGCGCGATAGACAGGGTACCAGTACCCAACG--C 43189 | |||||||| |||||||| |||||||| | | |||||| |||||||| ||| | Sbjct 203 GGTATGCGATAACACGGTCACGGCGCTGAGACAGAGACAGCGTACCAGT---GTACGGTC 147 Query 43190 TTCACCCGGCTGACGCGGGATGATCATGTTAGGGTCGATGACGTGTTTCGGCTTCACGTA 43249 ||| || ||||| ||||| |||| ||| || ||||| ||||| || || || ||||| Sbjct 146 TTCGCCTGGCTGCACAGGGATAATCAGGTTTGGATCGATAACGTGCTTAGGTTTAACGTA 87 Query 43250 GGCTGGTTTAAAAGTCTTCGTGTTGTAGCCGCTTTCTTTGATCACGCGGCCCTGTACGTT 43309 || || || || | ||| | | |||| ||||||||| |||||||||| ||||| Sbjct 86 AGCAGGCTTGAATCGCATCGCGGTCCAGCCTTCTTCTTTGATAACGCGGCCCTCGACGTT 27 Query 43310 AGGTGCAACGAACGGCGCAACGCGGG 43335 || || ||| | || || ||||||| Sbjct 26 CGGCGCCACGTAAGGTGCTACGCGGG 1 >seq98424 Length=301 Score = 113 bits (124), Expect = 2e-20 Identities = 204/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 31767 ACCAGCATTGCTAACGCCCACCACATAGCGATTCTCCTTAAAAGATTGGGTTGCCGTCGA 31826 |||||||| ||||| |||||||||||||| ||| ||||| |||| ||| |||||||| | Sbjct 292 ACCAGCATGGCTAATGCCCACCACATAGC-TTTCCCCTTAGAAGACTGGATTGCCGTCAA 234 Query 31827 ACGGGGAACGGTCTGGCAGTGACGGGATGCCGCCGAAGTTCGCCAGATTGTTGAAGATGG 31886 |||| |||||| |||| ||| ||||||||| | || |||| ||||| || Sbjct 233 ACGGCGAACGGGACGGCATTGAGATGATGCCGCCATAATTGTCCAGGTTGTTAAAACGAC 174 Query 31887 TATCACAGGCCGTACTG--GTACGCGGGCATCCCGGGTAAGTCTTGAGGATGTAGCCCCC 31944 | | || || | ||| || |||||||| || || ||| ||| | || ||| || Sbjct 173 TCTGGCACGCAG--CTGACGTGCGCGGGCAACCAGGATAAACCTTAATGACCATGCCACC 116 Query 31945 GGCCAAGCCGTCTACGGTACCGAAGATGGTGATGGTATTCCCGGTATGGGTTTCGATGCC 32004 ||||| ||| || ||||| | | || || |||| || || || ||| | Sbjct 115 GGCCAGTCCGCTGACCACGCCGAA-AACACCAGCGTGTTGTCGGTGTGCGTCTCAATGGC 57 Query 32005 GCGCCGTTCCACGCCGTACACCGGGTCGATCCACTCGATGAAGCCGCCCGCGAA 32058 ||| ||||| ||| | ||| || ||||| |||||||| ||||||| ||| Sbjct 56 GCGACGTTCAGTACCGCGCTGCGGATCTATCCATTCGATGAAACCGCCCGTGAA 3 >seq76547 Length=445 Score = 111 bits (122), Expect = 6e-20 Identities = 237/349 (68%), Gaps = 14/349 (4%) Strand=Plus/Plus Query 44743 CGCCAACGCATATGCCGCAGAATAGCAGTTTGAATCGACAACCGCCAGCGAAGGTTTCTC 44802 || || ||| ||||| || ||||| ||||| | ||| || ||||||| || || || || Sbjct 12 CGACAGCGCGTATGCTGCTGAATAACAGTTCGCATCCACGACCGCCATCGTTGGCTTTTC 71 Query 44803 GCCGCGTGTATCAAACATTTCCTGTGACA-GTTCGAAACAGCCTGCTGCTTCCCCGCCGT 44861 | | | | ||| || | || | || ||||| || | ||| | || || | Sbjct 72 GAGGTTGGCG------AGTTC-TGCGGCAAGCTCAAAACAACCGGATGCCTGACCACCAT 124 Query 44862 TCGAGTTAACGTCGTAGATGATAGCCTCGACATCCGGGTCGGCCATCGCTGC-ATTTCGT 44920 | ||| || || | || ||| ||||||||| ||| |||| || || | | | Sbjct 125 TACTGTTCACATCAAAAATAATACGCTCGACATCA---TCGTCCATTGCCGCCAGTGCAG 181 Query 44921 --TGACTGCGGATAAAATTGTACCCCGTCACGTAGCCGTAGTAATACCCGCCATAGCGGT 44978 |||| ||||| || || || || || ||||| || | ||||| || || ||||||| Sbjct 182 CCTGACGACGGATGAAGTTATATCCGGTTACGTACCCAAAATAATAGCCACCGTAGCGGT 241 Query 44979 TAATCAGGGTGCCGTGAATCGGGATGATAGCGAGGCCGTTGGAGAAGGCGAAAGGCTTGT 45038 |||||||| | ||||||||||| ||||| ||| ||||| ||| || ||||| |||| Sbjct 242 TAATCAGGCTACCGTGAATCGGAATGATGGCGGTACCGTTAACGAAAGCAAAAGGTTTGT 301 Query 45039 CCGCAGACGGTCGGCCAACGCCGTACGCTGCACACAGGTTTTCGCGCAT 45087 | ||| | | |||||||| |||| | | || || ||| |||||| Sbjct 302 CTGCACTGGCCTGCCCAACGCCATACGTTTCGCAGAGCGTTTTGCGCAT 350 >seq129722 Length=886 Score = 93.3 bits (102), Expect = 2e-14 Identities = 114/152 (75%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 39720 GGCCGCTTCGACGATGTCGATGTAGACGCGCTGCGTGATGTTGTTA--AGCTGCATGGCC 39777 || ||| ||| || |||||||| ||||||| ||| | | | | |||| || || Sbjct 156 GGACGCATCGCGGACATCGATGTAAACGCGCT-CGT-ACGCCGATCCCAGCTTCAGTGCA 99 Query 39778 TTGAAGGTGAAGGACATGACCTGCCAGTCGTCGCCTTTCAGTGCATAATCGCCATCCGGC 39837 ||| ||||| ||||| ||||||||||| || || ||||| ||||| |||||||||||| Sbjct 98 GAGAACGTGAACGACATAACCTGCCAGTCATCACCCTTCAGCGCATAGTCGCCATCCGGC 39 Query 39838 GCGATGGACACTTTCGGGAAGTAGTAGTTCTT 39869 | | ||||||||||||| |||||| ||| Sbjct 38 TGCAGCGCCACTTTCGGGAAGAAGTAGTCCTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193517703604800