Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq28556 136 9e-27 seq2641 98.7 2e-15 seq29103 95.1 3e-14 >seq28556 Length=388 Score = 136 bits (150), Expect = 9e-27 Identities = 164/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | ||||| |||||||| ||||| ||||||||||| | | || | Sbjct 65 AGTCGAAGGACCAAGTGAAGGGTAGACTCCTTTTGAATGTTGTAATCAGAGAGGGTACGG 124 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| ||||||||||| || | ||||||||||| | || |||| Sbjct 125 CCATCTTCCAGCTGCTTT--CCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCTT 182 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 | || || || || || |||||| | || | | | || ||| ||||||||| || | Sbjct 183 CTTTGTCCTGGATCTTCGACTTGACATTGTCAATGGTATCCGAAGACTCTACTTCTAGCG 242 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || ||||| ||||| ||||| ||||||| |||||| Sbjct 243 TGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATTTGCATT 283 >seq2641 Length=263 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || ||||| |||||||| ||||| || |||||||||||||| | |||| Sbjct 237 AGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGGCAAGGGTTCGA 178 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | || || || ||||| || | || || || | | || || ||| Sbjct 177 CCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGGGAATACCCTCC 118 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||| | ||||||| | || | | || ||| || |||||||| || Sbjct 117 TTGTCTTGAATTTGGT-TTTGACATTGTCGATAGTATCCGAAGATTCAACTTCAAGGGTG 59 Query 152067 ATAGTTTTGCCCGT 152080 ||||| ||||| || Sbjct 58 ATAGTCTTGCCGGT 45 >seq29103 Length=1863 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | || ||||| ||||| |||||||| || || | ||| | || || || | Sbjct 1082 CAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCGTCCTCAA 1141 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || | ||||| ||||| || | ||||||||||| | || || ||||| || || | Sbjct 1142 G-CTGCTTCCGGC-AAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGA 1199 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | |||| || ||| || ||||| || || || |||| Sbjct 1200 TCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGACCTCAAGGGTGATGGTCTTGC 1259 Query 152077 CCGTGAGAGTCTTCACGAA 152095 |||| || ||||||||||| Sbjct 1260 CCGTCAGGGTCTTCACGAA 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151894532231300