Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq29027 131 5e-26 seq38457 96.9 1e-15 seq34527 91.5 4e-14 >seq29027 Length=2418 Score = 131 bits (144), Expect = 5e-26 Identities = 236/342 (69%), Gaps = 11/342 (3%) Strand=Plus/Plus Query 36441 CCACCAAGCATCTGCATCACGCCGCCCATCTGCGGAATGACAATC---TCTGTGGTGTAT 36497 ||||| ||||||||||| |||||||| | |||||| | || |||||||| Sbjct 828 CCACCCAGCATCTGCATGGTGCCGCCCACGT------TGACAACCACCTCCGTGGTGTAA 881 Query 36498 CTGTCTATTCCGTTGCTG-TCAGTCCATTTACGAGTACGAAGCTGGCCTTCGATGTAAAC 36556 | || ||| ||| || ||||||||| || || ||||||||||| || || || Sbjct 882 CGTTCCTGACCGCC-CTGATCCTGCCATTTACGGGTGCGCAGCTGGCCTTCAATATACAC 940 Query 36557 CTGCGAACCTTTTCGAAGGTATTCTCCTGCAACTTCCGCAAGTTTCCCGAATATGACAAT 36616 ||| |||||||| || |||||||| || || |||||||| ||||| || || | || | Sbjct 941 CTGAGAACCTTTACGCAGGTATTCCCCCGCCACTTCCGCCAGTTTGCCAAACAGCACGAC 1000 Query 36617 ACGATGCCACTCTGTCTGTTCTTTCTTTTCTCCTGTCTGCTTATCTTTCCACTGCTCAGA 36676 ||| ||||| || || ||||| ||||| || |||||||| || ||| |||||| Sbjct 1001 ACGGTGCCATTCGGTGATCTCTTTGTTTTCACCGGTCTGCTTGTCGCGCCAGCTCTCAGA 1060 Query 36677 TGTTGCAACGGAAATGTTGACAATTGCAGAACCTGATGCTGAATATTTAACTTCAGGGTC 36736 || || | | ||||||| | | || ||| || || ||||| || || Sbjct 1061 GGTAGCCAGCGTAATGTTGGCGACAGCGCCACCATTTGGCATGTAACGTACTTCCGGATC 1120 Query 36737 GTTTCCGAGAGTTCCGACAATAATTACTTTATTTACGCCGCG 36778 | || ||| | ||||||| ||| ||||| || ||||| || Sbjct 1121 CTGACCCAGATTCCCGACAAGAATCACTTTGTTAACGCCACG 1162 >seq38457 Length=3703 Score = 96.9 bits (106), Expect = 1e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 23699 TGGCGGATAGTACAGGATTCGAACCTGTGAACCGTTTCCGGTTTATCGGTTAGCAACCGA 23758 ||||||||||| ||||||||||||||| | | ||||||| | || ||||||||||||| Sbjct 3612 TGGCGGATAGTGCAGGATTCGAACCTGCGCAGCGTTTCCACTGTACCGGTTAGCAACCGG 3553 Query 23759 CTGCTTTCGGCCTCTCAGCCAACTATCC 23786 || | |||| |||||| | ||||||||| Sbjct 3552 CTTCCTTCGACCTCTCGGACAACTATCC 3525 >seq34527 Length=8391 Score = 91.5 bits (100), Expect = 4e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 23699 TGGCGGATAGTACAGGATTCGAACCTGTGAACCGTTTCCGGTTTATCGGTTAGCAACCGA 23758 ||| ||||| | ||||||||||||||| | | ||||||| | || ||||||||||||| Sbjct 3867 TGGTGGATATTGCAGGATTCGAACCTGCGCAGCGTTTCCACTGTACCGGTTAGCAACCGG 3808 Query 23759 CTGCTTTCGGCCTCTCAGCCAACTATCC 23786 || | ||||||||||| | ||||||||| Sbjct 3807 CTTCCTTCGGCCTCTCGGACAACTATCC 3780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151847879763600