Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031928.1 Length=169936 Score E Sequences producing significant alignments: (Bits) Value seq31280 172 6e-38 seq49234 147 2e-30 seq50823 116 4e-21 >seq31280 Length=10079 Score = 172 bits (190), Expect = 6e-38 Identities = 285/409 (70%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 143367 CATCAGGTCGTTCAACTGGATTCCATAGTCCATATGACGAATACGGTTCTCATCGACACC 143426 ||||| | ||| | ||| | || |||||||| ||||| | ||||| | || ||||| Sbjct 1332 CATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACC 1391 Query 143427 CTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAG 143485 |||||||||||| || | ||| |||| ||||||| |||||| || ||||| | || Sbjct 1392 ACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAG 1451 Query 143486 CAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAAT 143545 | || || ||||||||||||| || || || ||||| ||||| || || |||||||| | Sbjct 1452 C-GTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGT 1510 Query 143546 GTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTT 143605 | || |||| || ||| ||||||||| |||| || || ||| | || Sbjct 1511 GCTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCA 1570 Query 143606 CAGCACGAATCATACCAACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTA 143665 || || || ||| |||| ||||||||||| || |||| |||| ||||| | | Sbjct 1571 GCGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAA 1630 Query 143666 TTGAGTTAGCAGTTTTGTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAG 143725 | | | | | || ||| || || | ||| |||||| |||||| | ||||| | Sbjct 1631 TAGCGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGG 1690 Query 143726 AACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTTGG 143774 | || || ||||||||||| ||||| |||| | ||| || || || || Sbjct 1691 AGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGG 1739 >seq49234 Length=879 Score = 147 bits (162), Expect = 2e-30 Identities = 157/203 (77%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 57969 AATGTAACATGGCCTGTGCCAAGGATAAAAGTAGGACTGATTTTGAAATCACGGACACGT 58028 ||||||||||| ||||| || | || | |||| ||||||||| |||||| || ||| Sbjct 375 AATGTAACATGACCTGTACCTAA-ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGT 433 Query 58029 TTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGATATTCA 58088 |||||| || ||||||||||| |||||||| |||||||| |||||||| |||||| Sbjct 434 TTACCAGCTTGTACGTGCTTACGAACAGCACCGAATACACGTGGCAATTCACGGTATTCA 493 Query 58089 GCCATTAAGTGTTGGTCAGCCAATTCAGATACTAAGGTA--AGGTTGATACGAGTCATTT 58146 ||||| | ||||||||||| ||||| |||| |||| || |||||||| |||||| Sbjct 494 GCCATAAGATGTTGGTCAGCTAATTCTTGTACT--GGTACGAGATTGATACGGGTCATTC 551 Query 58147 TTAA-TCTCCTGTAGTTGATAGG 58168 || |||||| || |||||| Sbjct 552 AAAATTCTCCTTTATAAGATAGG 574 >seq50823 Length=3276 Score = 116 bits (128), Expect = 4e-21 Identities = 144/193 (75%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 57963 TAAAAGAATGTAACATGGCCTGTGCCAAGGATAAAAGTAGGACTGATTTTGAAATCACGG 58022 ||||| || |||||||| ||||| ||||| ||| | | ||| ||||| |||||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 58023 ACACGTTTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGA 58082 | | ||| ||| | |||| || || | |||||||| || |||||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 58083 TATTCAGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAGGTAAGGTTGATACGAGT 58141 ||||||||||| | ||||| || ||||||| | || | | ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 58142 CATTTTTAATCTC 58154 |||||| ||| || Sbjct 306 CATTTTAAATATC 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542781702048000