Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031930.1 Length=59518 Score E Sequences producing significant alignments: (Bits) Value seq60383 179 1e-40 seq90894 132 2e-26 seq76547 107 7e-19 seq98424 104 9e-18 seq129722 82.4 3e-11 >seq60383 Length=344 Score = 179 bits (198), Expect = 1e-40 Identities = 201/266 (76%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 17284 CCCGCGTTGCGCCGTTCGTTGCACCTAACGTACAGGGCCGCGTGATCAAAGAAAGCGGCT 17343 ||||||| || || | ||| || || ||||| |||||||||| ||||||||| |||| Sbjct 1 CCCGCGTAGCACCTTACGTGGCGCCGAACGTCGAGGGCCGCGTTATCAAAGAAGAAGGCT 60 Query 17344 ACAACACGAAGACTTTTAAACCAGCCTACGTGAAGCCGAAACACGTCATCGACCCTAACA 17403 | | ||| | || || || || ||||| || || || ||||| ||||| || ||| Sbjct 61 GGACCGCGATGCGATTCAAGCCTGCTTACGTTAAACCTAAGCACGTTATCGATCCAAACC 120 Query 17404 TGATCATCCCGCGTCAGCCGGGTGAAG--CGTTGGGTACTGGTACCCTGTCTATCGCGCA 17461 |||| ||||| ||||| || |||| ||| |||||||| |||||| | | || Sbjct 121 TGATTATCCCTGTGCAGCCAGGCGAAGACCGTAC---ACTGGTACGCTGTCTCTGTCTCA 177 Query 17462 GCGCCGCGACCGTGTCATCGCATATCTGCTGATGAAACACCGCGCCATGCACGAAAATAC 17521 |||||| |||||||| |||||||| ||||| ||||| ||||| || |||||||||| || Sbjct 178 GCGCCGTGACCGTGTTATCGCATACCTGCTTATGAAGCACCGTGCGATGCACGAAAC-AC 236 Query 17522 GTGGGAATGGATGGCGGCGCAGGCTG 17547 |||||||| | | |||||||||||| Sbjct 237 ATGGGAATGCAGGACGGCGCAGGCTG 262 >seq90894 Length=384 Score = 132 bits (146), Expect = 2e-26 Identities = 197/277 (71%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 36689 CCGTTCGAACGTGACGCTGCCGAACAATAACCAGATCTTCGCCGTGTCCGTCATCGCGTA 36748 |||||||||| | ||||||| | | |||||||||| ||| ||||| |||||||| || Sbjct 3 CCGTTCGAACACGGCGCTGCCAACGCAAAACCAGATCTACGCGGTGTCAGTCATCGCCTA 62 Query 36749 TGCACGCAAAGGCGACCTTGATGATCGTAAACTCGGGCTGGTGGTCAATACGGAAGGCGG 36808 ||||||||||| |||||||| | ||| |||||| ||| || || | || || || Sbjct 63 CGCACGCAAAGGTGACCTTGACCAGCGTTCACTCGGCCTGCTGACGAAGATTGACGGTGG 122 Query 36809 AACGCCGACTGAAATTCAGGTGCCGCTTACCGAATCGTACAAGTATTATCAGGCATCGTT 36868 || |||||| | ||| || |||| || || || | | |||||| ||||| ||| Sbjct 123 CGCGGAGACTGAGGTACAGCTGGCGCTGACGGAGTCTTTCGCGTATTACCAGGCGACGTA 182 Query 36869 CGAGCAAGCGCCGGGCGGAAGTGAC-TGGAACCAGAACAACGTCGAATCTTTGCAATTCG 36927 | | | || || ||| | | | | |||| | ||||||||| || || |||| |||| Sbjct 183 TGCGAAGGCACCAGGC-AACGCGGCATGGACACCGAACAACGTTGAGTCCCTGCAGTTCG 241 Query 36928 GCATCATCACGCGATAAGGGAGGGACACACTATGCCT 36964 ||||| ||| || ||| |||| ||||||| || Sbjct 242 GCATCCGCACCCGTTAA-----GGACGCACTATGGCT 273 >seq76547 Length=445 Score = 107 bits (118), Expect = 7e-19 Identities = 241/352 (68%), Gaps = 20/352 (6%) Strand=Plus/Minus Query 15533 ATGCGCGAAAACCTGTGTGCAGCGTATGGAGTTGGCC-GACCATCTGCGGACAAACCCTT 15591 |||||| ||| || || | | ||||||| ||||| | | ||| ||| |||||||| || Sbjct 350 ATGCGCAAAACGCTCTGCGAAACGTATGGCGTTGGGCAGGCCAG-TGCAGACAAACCTTT 292 Query 15592 CGCCTTTTCG--AACGGCCTCGCCATCATCCCGATCCACGGCACCCTGATTAACCGTTAT 15649 || ||||| ||||| ||||||||| ||||| ||||| | |||||||||||| || Sbjct 291 TGC--TTTCGTTAACGGTACCGCCATCATTCCGATTCACGGTAGCCTGATTAACCGCTAC 234 Query 15650 GGCGGGTATTACTACGGCTACGTGACGGGCTACAATTTTATCCGCAGTCA-GCGTAAC-- 15706 || || ||||| | || ||||| || || || || || ||||| |||| || || Sbjct 233 GGTGGCTATTATTTTGGGTACGTAACCGGATATAACTTCATCCGTCGTCAGGCTGCACTG 174 Query 15707 GCAGCGCTGGCCGACCCGGATGTAGAGGCGATTATCTACGACGTCAACTCGAACGGCGGG 15766 || || ||| ||| ||||| ||| ||||| | || || ||| || || || Sbjct 173 GCGGCAATGGACGA---TGATGTCGAGCGTATTATTTTTGATGTGAACAGTAATGGTGGT 117 Query 15767 GAAGCCGCAGGTTGTTTCGAG-TTGTCTCAGGAAATGTTTGATACACGCGGCGAGAAACC 15825 | || | |||||||| ||| ||| | || ||| | | | ||| || || Sbjct 116 CAGGCATCCGGTTGTTTTGAGCTTGCCGCA-GAACT------CGCCAACCTCGAAAAGCC 64 Query 15826 TTCGCTGGCGGTTGTCGATTCAAACTGCTATTCTGCGGCATATGCGTTGGCG 15877 || ||||||| || ||| | ||||| ||||| || ||||| ||| || || Sbjct 63 AACGATGGCGGTCGTGGATGCGAACTGTTATTCAGCAGCATACGCGCTGTCG 12 >seq98424 Length=301 Score = 104 bits (114), Expect = 9e-18 Identities = 202/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 28566 TTCGCGGGTGGCTTCATTGAGTGGATCGACCCGGTGTACGGCGTGGAACGTCGGGGCATC 28625 ||| |||| || ||||| || ||||| || ||| | ||| |||||||| | ||| Sbjct 3 TTCACGGGCGGTTTCATCGAATGGATAGATCCGCAGCGCGGTACTGAACGTCGCGCCATT 62 Query 28626 GAAACCCATACCGGGAACACCATCACCATCTTCGGTACCGTAGACGGCTTGGCCGGGGGC 28685 || || || |||| ||||| | | ||||| || ||| ||||||| ||| Sbjct 63 GAGACGCACACCGACAACACGCTGGTGTT-TTCGGCGTGGTCAGCGGACTGGCCGGTGGC 121 Query 28686 TACATCCTCAAGACCTACCCGGGATGCCCGCGCAC--CAGTACGGCTTGTGATACCATCT 28743 || | ||| || || || ||||||||||| ||| | || || | | | Sbjct 122 ATGGTCATTAAGGTTTATCCTGGTTGCCCGCGCACGTCAG--CTGCGTGCCAGAGTCGTT 179 Query 28744 TCAACAATCTGGCGAACTTCGGCGGAATCCCGTCACTGCCAGACCGTTCCCCGTTCGACG 28803 | ||||| |||| || | ||||| ||| ||| |||| |||||| ||||| |||| Sbjct 180 TTAACAACCTGGACAATTATGGCGGCATCATCTCAATGCCGTCCCGTTCGCCGTTTGACG 239 Query 28804 GCAACCCAATCTTTTAAGGAGAATCGCTATGTGGTGGGCGTTAGCTATGCTGGT 28857 |||| ||| |||| ||||| ||| |||||||||||||| ||||| |||||||| Sbjct 240 GCAATCCAGTCTTCTAAGGGGAAA-GCTATGTGGTGGGCATTAGCCATGCTGGT 292 >seq129722 Length=886 Score = 82.4 bits (90), Expect = 3e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 20749 AAGAACTACTACTTCCCGAAAGTGTCTATCGCGCCAGACGGCGACTACGCACTGAAAGGC 20808 ||| |||||| ||||||||||||| | | ||| || |||||||| || ||||| || Sbjct 7 AAGGACTACTTCTTCCCGAAAGTGGCGCTGCAGCCGGATGGCGACTATGCGCTGAAGGGT 66 Query 20809 GACGACTGGCAGGTCATGTCCTTCACCTTC 20838 || ||||||||||| ||||| ||||| ||| Sbjct 67 GATGACTGGCAGGTTATGTCGTTCACGTTC 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190041490728000