Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031933.1 Length=114180 Score E Sequences producing significant alignments: (Bits) Value seq33499 563 6e-156 seq33108 100 2e-16 seq34305 93.3 3e-14 >seq33499 Length=26748 Score = 563 bits (624), Expect = 6e-156 Identities = 633/847 (75%), Gaps = 10/847 (1%) Strand=Plus/Minus Query 42454 TTACTTGTTACGCATATCCATGATCATTTGACCATCGTAGCCAGTACCGACAACAGTCTG 42513 ||| |||||||| |||||| |||| | ||| |||||| || ||| | ||| || || Sbjct 24100 TTATTTGTTACGAGCATCCATAATCAACTTACCTTCGTAGTCACCACCAATAACTGTTTG 24041 Query 42514 CGGCACACCACCTTGGTATTTTTCAGCACGAAGCATTTCAACTTCCAGCTGCTTCCAACG 42573 || ||||||||||||||||| |||||||| |||||||||||| || || |||||||| Sbjct 24040 TGGTACACCACCTTGGTATTTCTCAGCACGTTTCATTTCAACTTCGAGTTGTTTCCAACG 23981 Query 42574 AATCATTTCAGGAGTAATAGTACGTTGCAGAGCGGCGTTAGCTTCAGCTTCTTTCTTAGC 42633 |||||| || ||||| || || |||| | |||||||||||||||||| | ||| Sbjct 23980 AATCATCTCTGGAGTGATTGTTTTCTGCAACACACTGTTAGCTTCAGCTTCTTTTTGAGC 23921 Query 42634 TGCGTACAGTTTAGCATCTGCGTCACGTTCGTTAGCTACTGCCATGTTTTCACGAGCGGA 42693 || || | |||||||||||| || |||||||| || || || | ||| || Sbjct 23920 AGCATATAATTTAGCATCTGCATCTCGTTCGTTTGCCTGGGCTTCATTATTACGGGCTTC 23861 Query 42694 ACGATCTGCCTCAGCTTGCTTAACTTTCTGCTGTGCTTCTTGTTCAACACGAGCCAGTTC 42753 ||||| ||||| || | ||||||| ||||||| ||||| | || || |||| || Sbjct 23860 TCGATCAGCCTCTGCCTTCTTAACTGCTTGCTGTGTTTCTTTAGCTACTCGGTCCAGATC 23801 Query 42754 AGCTTTTGCAGCGTTAACTTGTTCTTCACGAACTTTGGTGTTCTGTACCTGTTCCATGAT 42813 ||| | ||| |||||||| ||||||||||||| || || || |||||| | |||||| Sbjct 23800 AGCCTGTGCTGCGTTAACCTGTTCTTCACGAATCTTTGTATTTGTTACCTGCTTCATGAT 23741 Query 42814 TACCGGTGGCAGAGTAATATCCTGAAGGAATACTTGCTTAACGGTGTAACCATAAGGACG 42873 ||| |||| || ||||| || | ||| | || || || || |||||||||||||| Sbjct 23740 TACATCAGGCAAGGTGATATCTTGCAAGAAGATTTCTTTTACAGTATAACCATAAGGACG 23681 Query 42874 CGCATACTCCTCTACTTC-----TTGCTGAATAGCAGTTTGCAGTTGAGCCTGAATCTTA 42928 || || | || | ||| || |||||| |||| || |||||||||| | Sbjct 23680 TGCGTAGGCTTCAATTTCAGCTTTTACTGAATCC-----TGCAACTGCGCCTGAATCTCA 23626 Query 42929 GCGTCGAACAGATCTTGTGCTTTTGGTACAGACTTACCAAACTCACGAATCGTAGATAGC 42988 |||| ||||| ||| |||||||| || || || ||||||||||| || | || |||| Sbjct 23625 GCGTTGAACAAATCCTGTGCTTTCGGGACTGATTTACCAAACTCTCGGACAGTGGATAAA 23566 Query 42989 ATCTTCTCTTCAACGTACTTGTTCAGAGCTTGATCCTGAGTACCTGCGTTAACACGGTTC 43048 | ||| | ||||| || || | ||||||||| || ||||| ||||| |||| |||||| Sbjct 23565 AGCTTTTGCTCAACATATTTATCCAGAGCTTGCTCTTGAGTGCCTGCATTAATTCGGTTC 23506 Query 43049 ATAGGAGCTTTAGCACCATCAAACTGCAACATAACGGTAATGTCAACTGTAGACTTAAAC 43108 ||||| || |||| |||||||||||||||||||||||| || || ||||| || |||||| Sbjct 23505 ATAGGTGCCTTAGAACCATCAAACTGCAACATAACGGTCATATCCACTGTTGATTTAAAC 23446 Query 43109 TTATCCTGGCTAGGAACCTGAAGTTTATCCAGTTTCATAGAAATATCTTTCGTACTAAAA 43168 |||||||| || || || || | |||||| | | || |||||||| ||||| ||| Sbjct 23445 TTATCCTGACTCGGTACTTGCAATTTATCATATGTTATTTTGATATCTTTTGTACTGAAA 23386 Query 43169 GTATCAAAAGAGGCGAATGGGTTGACAATATGGAACCCCGGCAATACAGGATTAGGACTA 43228 || ||||| || |||||||| || | ||||||||| ||| ||||||||||||| || Sbjct 23385 GTCTCAAAGCTTGCAAATGGGTTAACCACATGGAACCCTGGCTTTACAGGATTAGGATTA 23326 Query 43229 ACTTTACCCAGGAAAGTCTGAGTTTTAACCGTACCGTCCTGAACAACTGTATAGGAATTG 43288 |||||||||| || || || ||||| || ||||| || || || | |||||||||| Sbjct 23325 ACTTTACCCATAAAGGTTTGTGTTTTTACTGTACCATCTTGCACGATGATATAGGAATTT 23266 Query 43289 AGAGCCA 43295 ||||||| Sbjct 23265 AGAGCCA 23259 >seq33108 Length=3479 Score = 100 bits (110), Expect = 2e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 28005 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCGAACA 28064 ||||| ||||| ||| ||||| |||||||||| |||||| | ||||| || || Sbjct 2955 GTAAAGGTACGGGCAATGACGTCACGCTGTTGTTCAGGCGTCAGCGAATTAAAGCGCACG 2896 Query 28065 GCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGCATCC 28124 ||||| || || ||||| ||||||| ||| ||||| || |||||||||||| || || Sbjct 2895 GCATACCCGGAAACACGAATGGTCAGCTGCGGATACTTCTCAGGATGTTTCACGGCGTCT 2836 Query 28125 AAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTCGAC 28177 ||| ||||||| | || || || |||| |||||| || || || || Sbjct 2835 TCCAGCGTTTCACGGCGCAGGACGTTAACGTTTAAGTGCTGCCCGCCTTCCAC 2783 >seq34305 Length=2218 Score = 93.3 bits (102), Expect = 3e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 28001 CTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGCGTCAATGCGTTAAATCG 28060 ||| ||||| ||||| |||| ||||| | ||| || || || | | |||||| || Sbjct 595 CTGGGTAAAGGTACGGGTAATCACGTCCTGCTGCTGCTCTTTGGTGAGCGAGTTAAAGCG 654 Query 28061 AACAGCATAGCCAGAGACACGGATGGTCAACTGAGGATATTTTTCAGGATGTTTCTGCGC 28120 ||| |||||||| || || |||||||| |||||||||||||| ||||| | | | || Sbjct 655 AACGGCATAGCCCGAAACGCGGATGGTTAACTGAGGATATTTCTCAGGGTTATCCATTGC 714 Query 28121 ATCCAAAAGCTGATCACGGCTTAACACATTGACATTTAGGTGCTGACCACCCTC 28174 |||| | | || ||| | | ||| || ||||| || ||||| || || || Sbjct 715 GTCCATCAACATTTCCCGGTTCATCACGTTAACATTCAGATGCTGGCCGCCTTC 768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 364671169680300