Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031934.1 Length=168929 Score E Sequences producing significant alignments: (Bits) Value seq31280 185 9e-42 seq49234 152 6e-32 seq50823 105 7e-18 >seq31280 Length=10079 Score = 185 bits (204), Expect = 9e-42 Identities = 289/411 (70%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 142448 CATCAGGTCGTTCAACTGGATTCCGTAGTCCATATGACGAATACGGTTCTCATCGACACC 142507 ||||| | ||| | ||| | ||||||||||| ||||| | ||||| | || ||||| Sbjct 1332 CATCATTTTGTTGAGCTGCACACCGTAGTCCATGTGACGTACGCGGTTACCTTCCACACC 1391 Query 142508 CTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATA-ATAAG 142566 |||||||||||| || | ||| |||| ||||||| |||||| || ||||| | || Sbjct 1392 ACGGTTGTTTTTCAGGACTAACAGGCTTTCTACTTCCAGATGCCACATCGGATAGAACAG 1451 Query 142567 CAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAAT 142626 | || || ||||||||||||| || || || ||||| ||||| || || |||||||| | Sbjct 1452 C-GTCGCTGCGCCGCCACGGACGCCGCCCTGCGAACAGGATTTCACCGCTGTCTGGAAGT 1510 Query 142627 GTTTCCAGAATGGAATAACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTT 142686 | || |||| || ||| ||||||||| |||| || || ||| | || Sbjct 1511 GCTTGTAGAACGGGATACAACCGGTATGGAAAGCTTCACCGCCGCGAATCGGGCTGCCCA 1570 Query 142687 CAGCACGAATCATACCAACGTTGATACCAATACCTGCACGTTTAGAAATGTATTCAATTA 142746 || || || ||| |||| |||||||||||||| |||| |||| ||||| | | Sbjct 1571 GCGCGCGGATACGACCCGCGTTAATACCAATACCTGCGCGTTGTGAAACGTATTTCACAA 1630 Query 142747 TTGAGTTAGCAGTTTTGTTAATAGATTTCAGCGAGTCGCCGGCTTCAATAACCACACAAG 142806 | | | | | || ||| || || | ||| |||||| |||||| | ||||| | Sbjct 1631 TAGCGCTGGAGGTCGCGTTGATGGAATCCAGGCTGTCGCCACATTCAATCAGGACACAGG 1690 Query 142807 AACTAAATTGACGGGTTGGTGTACGTGCTCCAGCCATAATAGGAGTAGGCA 142857 | || || ||||||||||| ||||| |||| | ||| || || || |||| Sbjct 1691 AGCTGAACTGACGGGTTGGCGTACGCACTCCCGACATGATTGGCGTCGGCA 1741 >seq49234 Length=879 Score = 152 bits (168), Expect = 6e-32 Identities = 167/216 (77%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 59191 TTGACGTTTACGTAAAAATTCAAGCTTATCGTAAAAGAATGTAACATGACCTGTACCAAG 59250 ||| ||||| ||||| || | |||| || || |||||||||||||||||||| | Sbjct 340 TTGGCGTTTT-GTAAATATAATAATTTATTATAGAA-AATGTAACATGACCTGTACCTAA 397 Query 59251 GATAAAAGTAGGACTGATTTTGAAATCACGGACACGTTTACCATTAGCAACATGCTTACG 59310 || | |||| ||||||||| |||||| || ||||||||| || |||||||| Sbjct 398 -ATGTAGGTAGTACTGATTTTAAAATCATTGATTCGTTTACCAGCTTGTACGTGCTTACG 456 Query 59311 AACTGCACCGAAAACACGTGGTAATTCACGGTACTCAGCCATTAAGTGTTGGTCAGCCAA 59370 ||| |||||||| |||||||| ||||||||||| |||||||| | ||||||||||| || Sbjct 457 AACAGCACCGAATACACGTGGCAATTCACGGTATTCAGCCATAAGATGTTGGTCAGCTAA 516 Query 59371 TTCAGATACTAAGGTA--AGGTTGATACGAGTCATT 59404 ||| |||| |||| || |||||||| |||||| Sbjct 517 TTCTTGTACT--GGTACGAGATTGATACGGGTCATT 550 >seq50823 Length=3276 Score = 105 bits (116), Expect = 7e-18 Identities = 138/187 (74%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 59222 TAAAAGAATGTAACATGACCTGTACCAAGGATAAAAGTAGGACTGATTTTGAAATCACGG 59281 ||||| || |||||||| ||||| ||||| ||| | | ||| ||||| |||||| Sbjct 128 TAAAAAAAGGTAACATGTCCTGTTCCAAGAATATAGCTTTTACTTATTTTAAAATCATTA 187 Query 59282 ACACGTTTACCATTAGCAACATGCTTACGAACTGCACCGAAAACACGTGGTAATTCACGG 59341 | | ||| ||| | |||| || || | |||||||| || ||||||||||||||||| Sbjct 188 ATAT-TTTCCCAGCATCAACGTGTTTCCTTACTGCACCAAATACACGTGGTAATTCACGA 246 Query 59342 TACTCAGCCATTAAGTGTTGGTCAGCCAATT-CAGATACTAAGGTAAGGTTGATACGAGT 59400 || |||||||| | ||||| || ||||||| | || | | ||| || || ||||| Sbjct 247 TATTCAGCCATCAGATGTTGATCGGCCAATTCCTGAACCGGAACTAA-ATTTATCCGAGT 305 Query 59401 CATTTTA 59407 ||||||| Sbjct 306 CATTTTA 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539564550532000