Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq31280 96.9 4e-15 seq64888 87.8 2e-12 seq45636 86.0 7e-12 seq61628 84.2 3e-11 seq83917 82.4 9e-11 >seq31280 Length=10079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 347/537 (65%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 152079 GATTATGTCAAGCGATACTACAACGCAATCTCAAAGCACAAAATCAACATTCCCACACCT 152138 ||||| ||||||| | |||| | || || || | | |||||| | | || || || Sbjct 1790 GATTACATCAAGCGTTTCTACGATGCGATTTCCACGTTTAAAATCTCCCTGCCGACGCCA 1731 Query 152139 ATCATGGCGGGGGTTAGAACTCCACTTCGACAATTT-GCTAGCTGTGTGCTTGTTGACAG 152197 |||||| |||| || | || ||| || || || ||| |||||| || |||| | Sbjct 1730 ATCATGTCGGGAGTGCGTACGCCAACCCGTCAGTTCAGCTC-CTGTGTCCTGATTGAATG 1672 Query 152198 CGATGACACCCTCGATAGTATCTTTACTAGCGATATGGCTATTGGCAGATACGTTGCACA 152257 | |||| ||| ||| ||| | | | | ||||||| | ||||||| |||| Sbjct 1671 TGGCGACAGCCTGGATTCCATCAACGCGACCTCCAGCGCTATTGTGAAATACGTTTCACA 1612 Query 152258 AAGGGCGGGCATCGGTATCAACGCGGGTCGCATCAG-GGGC--ATCAACGCTAAGATCAG 152314 | | || || || ||||| ||||||||||| ||| | | || || | | ||| | Sbjct 1611 ACGCGCAGGTATTGGTATTAACGCGGGTCGTATCCGCGCGCTGGGCAGCCC---GATTCG 1555 Query 152315 AGGCGGAGAAGTTCAACACACAGGTGTTATCCCATTCCTCAAAAAGTTTGAAGCAACTGT 152374 ||||| |||| | || || ||| |||||| ||| ||| | || | || | || Sbjct 1554 CGGCGGTGAAGCTTTCCATACCGGTTGTATCCCGTTCTACAAGCACTTCCAGACAGCGGT 1495 Query 152375 CAGATGCTGCACTCAAAATGGCATCCGAGGTGGATCAGCGACTGTCCACTTCCCAATCTG 152434 | || ||| | || ||| |||| || || ||||||| | || || || || Sbjct 1494 GAAATCCTGTTCGCAGGGCGGCGTCCGTGGCGGCGCAGCGACGCTGTTCTATCCGATGTG 1435 Query 152435 GCACCAAGAAATCGAAGACATTCTAGTCCTTAAGAACAACAAAGGCACAGAAGATAACCG 152494 ||| | ||| | ||| | | ||||||| || |||||| || |||| |||||| Sbjct 1434 GCATCTGGAAGTAGAAAGCCTGTTAGTCCTGAAAAACAACCGTGGTGTGGAAGGTAACCG 1375 Query 152495 AGTTCGTAAACTAGATTACTCTATTCAAATCAGCAAACTGTTCTATGAGCGTTTCATCAA 152554 || ||| | | || ||| | | || ||| |||| || | || |||| | | || Sbjct 1374 CGTACGTCACATGGACTACGGTGTGCAGCTCAACAAAATGATGTACCAGCGCCTGCTGAA 1315 Query 152555 CAACGAAGACATCTCCCTCTTCAGTCCGCACGACGTTCCTGGTCTGTATGATGCTTT 152611 ||| |||||| | || || || ||| ||||| ||||| ||||| ||||| || Sbjct 1314 GGGCGAGGACATCACGCTGTTTAGCCCGTCAGACGTACCTGGCCTGTACGATGCGTT 1258 >seq64888 Length=373 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 157426 GTAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGC 157485 |||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||| | Sbjct 162 GTAGCTCAGCAGGATAGAGCAACGGCCTTCTAAGCCGTCGGTCGGGGGTTCGAATCCCTC 103 Query 157486 CTGAGACGCCA 157496 ||| |||| || Sbjct 102 CTGGGACGTCA 92 >seq45636 Length=1761 Score = 86.0 bits (94), Expect = 7e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 157427 TAGCTCAGCTGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGCTGGTTCGAATCCAGCC 157486 ||||||| ||||||||||||||||||||||||||||| |||||| ||||||| ||| || Sbjct 106 TAGCTCAACTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCGCAGGTTCGAGTCCTGCA 47 Query 157487 TGAGACGCCA 157496 | | ||||| Sbjct 46 GGGGTCGCCA 37 >seq61628 Length=656 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 18376 TGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGGGGGTTCAA 18435 || |||||||||||| || | ||||||||||||||| |||||| ||||||| ||||||| Sbjct 495 TGCCCGAGTGGTTAAAGGGGACGGACTGTAAATCCGTTGGCTCAGCCTACGTTGGTTCAA 554 Query 18436 ATCC--CTCCCTGC-CCATACT 18454 |||| |||||| | |||| || Sbjct 555 ATCCAACTCCCTCCACCATTCT 576 >seq83917 Length=859 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 158116 ATGGAAAGGTGGTCGAGTGGTTGATGGCTCTGGTCTTGAAAACCAGCGAAGTGAGAGCT- 158174 |||||| |||| ||||||||||| ||| || ||||||||||| ||||| | | | || Sbjct 81 ATGGAAGCGTGGCCGAGTGGTTGAAGGCACTAGTCTTGAAAACTAGCGACGGGGTAACTC 140 Query 158175 -TCCGTGGGTTCGAATCCCACCCTTTCCG 158202 | ||||||||||||||||||| ||||| Sbjct 141 GTTCGTGGGTTCGAATCCCACCGCTTCCG 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595335964648000