Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2641 158 3e-33 seq29103 145 2e-29 seq35368 123 5e-23 seq50444 118 2e-21 seq27767 113 9e-20 seq30797 104 5e-17 seq57763 100 6e-16 seq83781 96.9 7e-15 seq53729 84.2 5e-11 seq35297 84.2 5e-11 >seq2641 Length=263 Score = 158 bits (174), Expect = 3e-33 Identities = 160/207 (77%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || ||||| |||||||| | || |||||| || |||||||| || ||| Sbjct 246 CCACCACGAAGTCGAAGAACCAGATGCAGAGTAGATTCTTTCTGAATGTTGTAATCGGCA 187 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || ||||| || | || || || |||||||| | |||||||| || ||| Sbjct 186 AGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAGATGAGTCGTTGTTGATCGGGGGGA 127 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||||||| || || | ||| || | |||||||| ||||||| ||| ||| Sbjct 126 ATACCCTCCTTGTCTTGAAT-TTGGTTTTGACATTGTCGATAGTATCCGAAGATTCAACT 68 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || ||||| ||||| || |||||| Sbjct 67 TCAAGGGTGATAGTCTTGCCGGTCAAA 41 >seq29103 Length=1863 Score = 145 bits (160), Expect = 2e-29 Identities = 166/219 (76%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAA-CGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||| || || ||||| |||| || | ||| || ||||| ||||||||||| || Sbjct 1062 CCACCTCGGAGACGAAGAACCAAGTGGACGCGTCGACTCCTTTTGAATGTTGTAGTCTGC 1121 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || |||| ||||| ||||| || || ||||| || Sbjct 1122 AAGAGTGCGGCCGTCCTCAAGCTGCTTCC-GGCAA-GATCAGGCGCTGCTGGTCCGGGGG 1179 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || || | ||||| ||||| || | ||||| Sbjct 1180 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATCGTGTCGGAGGACTCGAC 1239 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || ||||| ||||| ||||||| ||||| ||||| Sbjct 1240 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1278 >seq35368 Length=2069 Score = 123 bits (136), Expect = 5e-23 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| |||| || || || |||||||||||||| || ||||||||||| || || || ||| Sbjct 1971 AAACTGGATCCGTACATTAACGTCGATCCGGGTACCATGAGCCCGACACAGCACGGTGAA 1912 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTC 301545 || ||||| || |||||||| || ||||||||||||||| |||| ||||| || || ||| Sbjct 1911 GTATTCGTCACTGATGATGGGGCCGAAACCGATCTGGATTTGGGTCACTATGAGCGCTTC 1852 Query 301546 A 301546 | Sbjct 1851 A 1851 >seq50444 Length=3642 Score = 118 bits (130), Expect = 2e-21 Identities = 379/582 (65%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 43787 ACGGAGATCTAACCGATTCTTCGAGTTTGATTCATATCATAAGCAAAGTCCGGCCGGATG 43846 |||| ||| | |||||| |||||| ||||| | |||| | |||| | || || | Sbjct 1169 ACGGTGATTTGACCGATACTTCGAATTTGACACGTATCCTTTCTGAAGTACAACCTGACG 1110 Query 43847 AAATTTACAACATGGCCGCCCAAAGTTTTGTGGGTGACAGCTTCAACCAGGCTGAAGTGA 43906 | | || ||| | | ||| ||| | || | | || ||| | | | ||| | Sbjct 1109 AGGTCTATAACTTAGGCGCGCAATCTCACGTAGCGGTAAGTTTCGAATCGCCAGAATACA 1050 Query 43907 CTGCAAATGTAGATGCTCTTGGTGTTCTGCGTTTGTTAGACGCAGTTCGTATAGCAGGTG 43966 | ||| |||| ||||| | ||| ||||||| ||||||| || | || || | || Sbjct 1049 CAGCAGATGTTGATGCCATCGGTACTCTGCGTCTGTTAGAAGC-GATCAGATTTCTGGGT 991 Query 43967 TGAACT-------CTCGGATTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAG 44019 | |||| || ||| ||||| || || || || | || || ||| || Sbjct 990 TTAACTAAAAAAACTAAATTTTATCAAGCATCAACCTCTGAACTTTATGGTCTGGTGCAA 931 Query 44020 GAGATTCCTCAAACAGAAAGGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAG 44079 ||||| || |||| ||||| ||| || || || || || || || |||| |||||| || Sbjct 930 GAGATACCCCAAAAAGAAACGACACCATTCTACCCACGCAGCCCTTATGCTGTGGCTAAA 871 Query 44080 CTATATGCCTATTGGATTTGTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAAT 44139 | ||||| || |||||| || |||||||| || || || |||| | ||||| Sbjct 870 ATGTATGCATACTGGATTACCGTCAACTATCGCGAATCTTACGGAATGTATGCCTGTAAC 811 Query 44140 TCGATTTGTTTCAATCACGAAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATC 44199 ||||| || ||||||||| ||| | | || | ||||| || ||||||||| Sbjct 810 GGGATTTTGTTTAATCACGAATCTCCACGCCGTGGCGAAACTTTCGTAACACGTAAAATC 751 Query 44200 ACGAAAGCGGTT--GCGAATATTT-TCAACGGGACAGAAAAATGCA-TGTATCTAGGAAA 44255 || | | ||| ||||||||| |||| |||| ||| | | | ||| | || || Sbjct 750 AC--ACGTGGTATGGCGAATATTGCTCAA--GGACTTGAAACTACGCTCTATATGGGCAA 695 Query 44256 CATAGACTCTAAAAGAGATTGGGGATATGCCTTGGATTATGTAGAAGCCATGTGGCTGAT 44315 ||| || | | |||||||| |||| ||||||||| || |||| |||| Sbjct 694 CATGGATGCACTCCGCGATTGGGGCCATGCAAAAGATTATGTAAAAATGCAGTGGATGAT 635 Query 44316 GTTGCAACAAGACAGGTCAGACGACTACGTTATTGCAACTGG 44357 | |||| || || | | | || |||| ||||||||||| || Sbjct 634 GCTGCAGCAGGAAACGCCTGAGGACTTTGTTATTGCAACGGG 593 >seq27767 Length=2395 Score = 113 bits (124), Expect = 9e-20 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 301321 TTTATGTTCATCACCGGCGGCGTTTCAAGTTCATTGGGGAAAGGCCTCGCTGCTGCGAGT 301380 ||||| ||| |||| ||||| ||| ||| |||||||||||| |||| | || Sbjct 978 TTTATTTTCGTCACGGGCGGTGTTGTTTCTTCTTTGGGGAAAGGCATCGCCTCGGCCTCC 1037 Query 301381 AT---CGCCAGTTTACTAGAGAGGCGATGCTTAAAGATAGCGATGCTTAAAATGGACCCC 301437 | ||||| | | || ||| | ||| || | | | ||||| || |||| ||| Sbjct 1038 CTGGGCGCCATTCTGGAAGCGAGAGG--GCTGAAGGTCACC-ATGCTCAAGCTGGATCCC 1094 Query 301438 TATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACG 301497 || |||||||| ||||| || || |||||||| || || || || |||||||| || Sbjct 1095 TACATCAACGTGGATCCCGGCACCATGAGCCCCTTCCAGCACGGCGAGGTGTTCGTCACC 1154 Query 301498 GATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACGTTTCA 301546 |||| || || || ||||||||||||||||| |||||||| || |||| Sbjct 1155 CATGACGGCGCCGAGACCGATCTGGATCTGGGTCACTACGAGCGCTTCA 1203 >seq30797 Length=220 Score = 104 bits (114), Expect = 5e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || |||||||||| ||| || |||||| ||||| || |||||||| || ||||| | Sbjct 219 CCAGCAAAGATCAGACGCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGAATCTTCGAC 160 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | ||||| ||||| || | || || || |||||||| ||||| || |||||| Sbjct 159 TTTACATTGTCGATGGTGTCGGAGGACTCCACCTCAAGAGTGATGGTCTTTCCAGTCAAA 100 Query 283080 GTCTTAACGA 283089 ||||| |||| Sbjct 99 GTCTTGACGA 90 >seq57763 Length=521 Score = 100 bits (110), Expect = 6e-16 Identities = 225/335 (67%), Gaps = 5/335 (1%) Strand=Plus/Minus Query 43979 TTTGCCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAA 44038 ||| ||| || || || |||||| ||| || ||||||||||| || || || | ||| Sbjct 440 TTTACCAGGCCTCTACCTCGGAGATGTTTGGTAAGGTTCAGGAAATCCCACAGAAAGAGT 381 Query 44039 GGACTCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGATTT 44098 || || || ||||| || ||||| ||||||||||| || || ||||| | ||||| Sbjct 380 CAACGCCCTTCTATCCGCGTAGTCCTTATGGTGTGGCAAAACTCTATGCGCACTGGATGA 321 Query 44099 GTAAAAATTATCGCGAGTCGTATGGGATGTTCGTTTGTAATTCGATTTGTTTCAATCACG 44158 | ||| ||||| ||||| ||||| || || | || |||| |||||||| | Sbjct 320 CGATAAACTATCGTGAGTCCTATGGTATTTTTGCCTGCTCCGGGATTCTCTTCAATCATG 261 Query 44159 AAAGTCCCAACAGAGGTCATCAGTTCGTGACTCGTAAAATCACGAAAGCGGTTGCGAATA 44218 || ||| | || | | | ||||| || || ||||| || | | ||||| || | Sbjct 260 AATCGCCCCTTCGCGGCCGTGAATTCGTCACGCGAAAAATTACCGATACCGTTGCCAAGA 201 Query 44219 TTTTCAAC--GGGACAGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTG 44276 | ||| || | | | | || | |||||||| | ||| | || | ||||| Sbjct 200 --TCAAACTTGGCAAGGCGCAGGTCCTGGAGCTAGGAAATCTCGACGCCAAGCGGGATTG 143 Query 44277 GGGATATGCCTTGGATTATGTAGAAGCCATGTGGC 44311 ||| | |||| ||| || ||||| | |||||||| Sbjct 142 GGGCT-TGCCAAGGAGTACGTAGAGGGCATGTGGC 109 >seq83781 Length=522 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 301418 CGATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAAC 301477 ||||| | || ||||||| || ||||||||||| ||||| |||||||||||| || | Sbjct 214 CGATGATGAAGCTGGACCCTTACATCAACGTCGACCCGGGCACGATGAGCCCGTTCCAGC 273 Query 301478 ATGGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACG 301537 | || || |||||||| || || || || || || ||||| || || | || ||||||| Sbjct 274 ACGGCGAGGTGTTCGTCACCGACGACGGCGCCGAGACCGACCTCGACATCGGCCACTACG 333 Query 301538 AACGTTTC 301545 | || ||| Sbjct 334 AGCGGTTC 341 >seq53729 Length=372 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 301449 CGATCCGGGGACGATGAGCCCGACTCAACATGGAGAAGTGTTCGTGACGGATGATGGTGC 301508 |||||| || || |||||||| || || || || || || |||||||| ||||| || || Sbjct 1 CGATCCCGGCACCATGAGCCCCACCCAGCACGGTGAGGTTTTCGTGACCGATGACGGCGC 60 Query 301509 TGAAACCGATCTGGATCTGGGGCACTACGAACGTTT 301544 || || ||||| ||||| || ||||||||||| || Sbjct 61 GGAGACGGATCTCGATCTTGGCCACTACGAACGCTT 96 >seq35297 Length=11934 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 43983 CCAAGCGTCGACATCGGAGTTGTACGGAAAGGTTCAGGAGATTCCTCAAACAGAAAGGAC 44042 ||| || || ||||| || ||| ||| || || |||| ||||||||||| |||| || Sbjct 9594 CCAGGCTTCTACATCTGAAATGTTCGGTAAAGTACAGGCGATTCCTCAAAAAGAAGATAC 9653 Query 44043 TCCGTTTTATCCCCGGAGTCCATATGGTGTGGCGAAGCTATATGCCTATTGGAT 44096 || ||||| || || ||||| || |||||||| ||||| ||||| | ||||| Sbjct 9654 ACCTTTTTACCCACGCAGTCCTTACGGTGTGGCCAAGCTGTATGCACACTGGAT 9707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1044991701616200