Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq62679 280 2e-70 seq9701 223 4e-53 seq108192 205 1e-47 seq113658 132 5e-26 seq115563 131 2e-25 seq67709 125 7e-24 >seq62679 Length=571 Score = 280 bits (310), Expect = 2e-70 Identities = 227/270 (84%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGC-TCACTGCAACCTCC 8402 |||| |||||| ||||||||||||||||||||| |||||| || |||||||||||||| Sbjct 232 TCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCCTCACTGCAACCTCC 291 Query 8403 GCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAG-AGTAGCTGGGATTACAGGC 8461 ||||| |||||||||| |||||||||||| ||||||| | ||||||||||| ||||||| Sbjct 292 ACCTCCTGGGTTCAAGCGATTCTCCTGCCTTAGCCTCCCGTAGTAGCTGGGACTACAGGC 351 Query 8462 AAAAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTTTCACCATGTT 8521 | ||| || ||| |||||||||| | |||||||||| ||||||||||||||| Sbjct 352 ATCCACCAGCAGGCCCGGCTAATTTTTAT---TTTAGTAGAGGTGGGGTTTCACCATGTT 408 Query 8522 GGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGT 8581 ||| |||||| |||| || ||||| ||| | ||| ||||||| ||||||||| ||| ||| Sbjct 409 GGCTAGGCTGCTCTCAAA-TCCTGGCCTTAGGTGGTCCACCTTCCTCGGCCTTCCAGAGT 467 Query 8582 GCTGGGATTACAGGCATGAGCCACCGCGCC 8611 |||||||||||||||| |||||| || ||| Sbjct 468 GCTGGGATTACAGGCAGGAGCCATCGTGCC 497 >seq9701 Length=804 Score = 223 bits (246), Expect = 4e-53 Identities = 190/233 (82%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||| |||||| ||||||||||||||||||||| ||||| ||||||||||| ||| | Sbjct 574 TCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAAGCTCTG 633 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 ||||| ||||||| || |||||||||| ||||||||| ||| |||||||| ||||||| Sbjct 634 CCTCCTGGGTTCACGCCATTCTCCTGCTTCAGCCTCCCGAGCAGCTGGGAATACAGGCGC 693 Query 8464 AAGCCACCACGCCAAGCTAATTTT---TGTATTTTTAGTAGAGAGAGGGTTTCACCATGT 8520 || ||| ||| ||||||||| |||||||||||||||| ||||||||| ||| Sbjct 694 CCACCTCCATGCCCTGCTAATTTTTTGTGTATTTTTAGTAGAGCCTGGGTTTCACTGTGT 753 Query 8521 TGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCT 8573 | |||||| ||||||| | ||||||||||| ||||| | | |||||||||| Sbjct 754 TAGCCAGGATGGTCTCAATCTCCTGACCTC--GTGATGCGCTCGCCTCGGCCT 804 >seq108192 Length=574 Score = 205 bits (226), Expect = 1e-47 Identities = 207/266 (78%), Gaps = 10/266 (4%) Strand=Plus/Plus Query 8357 CCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCCCGGGTTCA 8416 ||| ||||| ||||||||||| | ||| | |||||||| |||| ||||| | | ||| Sbjct 235 CCCTGGCTGTAGTGCAGTGGC-TCATCATAGTTCACTGCAGCCTCAACCTCCTGAGCTCA 293 Query 8417 AGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAGCC---ACCAC 8473 || || | ||| |||||||| |||||||| ||| |||||||| ||| |||| Sbjct 294 AGGGATCCCCCT----CAGCCTCCCGAGTAGCTAGGACTACAGGCATGCGCCGTTACCAT 349 Query 8474 GCCAAGCTAATTTTTGT--ATTTTTAGTAGAGAGAGGGTTTCACCATGTTGGCCAGGCTG 8531 ||| |||||||||||| ||| |||||||||| | ||||||||||||||||||| || Sbjct 350 GCCTGGCTAATTTTTGTTTATTATTAGTAGAGACGGCATTTCACCATGTTGGCCAGGGTG 409 Query 8532 GTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTA 8591 ||||||| | ||||| ||| |||||| |||| ||| | |||||| ||||||||||||| Sbjct 410 GTCTCGAGCATCTGACTTCAAGTGATCTGCCTGTCTCAGTCTCCCACAGTGCTGGGATTA 469 Query 8592 CAGGCATGAGCCACCGCGCCTGGCCC 8617 |||| ||||||| || ||| || || Sbjct 470 CAGGTGTGAGCCATCGTGCCCGGTCC 495 >seq113658 Length=465 Score = 132 bits (146), Expect = 5e-26 Identities = 146/190 (77%), Gaps = 7/190 (4%) Strand=Plus/Minus Query 8349 CTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCGCCTCC 8408 |||||||||||||||||||||| ||||| |||| ||| |||||| | | | ||| Sbjct 214 CTCTGTTGCCCAGGCTGGAGTGTGGTGGCACGATCATAGCTTACTGCAGCTTTGACTTCC 155 Query 8409 CGGG--TTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAAAG 8466 ||| ||||||| || ||||| |||||||||| |||||||||||| | ||||| | Sbjct 154 TGGGCCTTCAAGCAATCCTCCTACCTCAGCCTCTCGAGTAGCTGGGACTGTAGGCATGTG 95 Query 8467 CCACCACGCCAAGCTAATTT---TTGTATTTTTAGTAGAGA-GAGGGTTTCACCATGTTG 8522 |||||| ||| |||||||| ||| ||||| ||||||| | ||| |||| | |||| Sbjct 94 CCACCATGCCTGGCTAATTTAAAATGT-TTTTTTGTAGAGACGGTGGTCTCACTAGGTTG 36 Query 8523 GCCAGGCTGG 8532 ||||||||| Sbjct 35 CCCAGGCTGG 26 Score = 131 bits (144), Expect = 2e-25 Identities = 135/176 (77%), Gaps = 8/176 (5%) Strand=Plus/Minus Query 8445 TAGCTGGGATTACAGGCAAAAGCCACCACGCCAAGCTAATTTTTG-------TATTTTTA 8497 |||||||||||||||||| | |||||||| || | |||||||| | ||||| Sbjct 465 TAGCTGGGATTACAGGCACACGCCACCACACCTGGATAATTTTTAATTTTTTTCTTTTTT 406 Query 8498 GT-AGAGAGAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGA 8556 || ||| | || ||||| |||||||| ||| || ||||||||||||||| |||| | Sbjct 405 GTTAGAAACAGAGTTTCGCCATGTTGCCCAAGCAGGTCTCGAACTCCTGGACTCAAGCAG 346 Query 8557 TCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCT 8612 ||| ||||||| ||||||||||||| ||||| | |||||||| | ||| |||| Sbjct 345 TCCTCCTGCCTTAGCCTCCCAAAGTGTTGGGACTGCAGGCATGCACTACCATGCCT 290 >seq115563 Length=228 Score = 131 bits (144), Expect = 2e-25 Identities = 88/97 (91%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 8510 TTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCATGTGATCCACCTGCCTCG 8569 ||||||||||||||||||||||||||| |||||||||||||| |||||| || ||||| Sbjct 1 TTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCGCCTCA 60 Query 8570 GCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACC 8606 ||||||| ||||||||| |||||||| |||||||||| Sbjct 61 GCCTCCC-AAGTGCTGGTATTACAGGAATGAGCCACC 96 Score = 109 bits (120), Expect = 6e-19 Identities = 91/111 (82%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCT---CACTGCAACCT 8400 ||| ||||||||||||||| |||||| ||||||| |||| ||| ||||||| ||| Sbjct 118 TCTTACTCTGTTGCCCAGGGTGGAGTACAGTGGCAAGATCATGGCTAATCACTGCAGCCT 177 Query 8401 CCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGG 8451 | |||||| || | |||| |||||||||||||||||||| ||||||||| Sbjct 178 CAACCTCCCAGGCTGAAGCCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGG 228 >seq67709 Length=523 Score = 125 bits (138), Expect = 7e-24 Identities = 131/168 (78%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 8344 TCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGGCCTGATCTCCGCTCACTGCAACCTCCG 8403 |||||||||| |||||||||||||||||||| ||||| | |||||||||| || Sbjct 359 TCTCACTCTGCCACCCAGGCTGGAGTGCAGTGGTGTGATCACAGCTCACTGCAGCCCTGA 418 Query 8404 CCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAA 8463 |||| | | ||||| || | || |||||||||| ||| || ||||| || |||| Sbjct 419 CCTCTCCAGCTCAAGGGATCATTGTGTCTCAGCCTCCTGAGCAGATGGGACTATAGGC-T 477 Query 8464 AAGCCACCACGCCAAGCTAATTTTTGTATTTTTAGTAGAGAGAGGGTT 8511 ||||||||||| ||||| ||||||| |||||||||||| |||||| Sbjct 478 GTGCCACCACGCCCGGCTAA-TTTTGTA-TTTTAGTAGAGACAGGGTT 523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520638626420000