Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20arachidis_20[genbank_20GCA_5F001013415.1_202015-05-26] 130,300 sequences; 87,617,276 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq28556 145 2e-29 seq29103 127 5e-24 seq2641 125 2e-23 seq30797 100 7e-16 >seq28556 Length=388 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || || || ||||| || || || || || || Sbjct 279 CAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACGCTAGAAGTAGAGTCTTCGGAT 220 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| ||||| |||||||||||||| || |||||||||||||| Sbjct 219 ACCATTGACAATGTCAAGTCGAAGATCCAGGACAAAGAAGGCATTCCTCCGGACCAGCAG 160 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| |||||||| | || || | ||||| ||| | Sbjct 159 CGTCTCATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGATTACAACATT 100 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || || || |||| Sbjct 99 CAAAAGGAGTCTACCCTTCA-CTTG 76 >seq29103 Length=1863 Score = 127 bits (140), Expect = 5e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 177926 AATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACAC 177985 || ||||||||| || || || || || || |||||||| ||||| || ||| ||||| Sbjct 1282 AAGTTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGACAC 1223 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 ||||| || ||||| ||||| |||||||| || || || || ||||||||||| || Sbjct 1222 GATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCG 1163 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 || ||||| ||||| || ||||| || || || | |||||||| || || ||| | || Sbjct 1162 CCTGATCTT-GCCGG-AAGCAGCTTGAGGACGGCCGCACTCTTGCAGACTACAACATTCA 1105 Query 178106 AAAAGAATCAAC 178117 ||| || || || Sbjct 1104 AAAGGAGTCGAC 1093 >seq2641 Length=263 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| || || ||| || || || ||||| || |||||| Sbjct 45 ACCGGCAAGACTATCACCCTTGAAGTTGAATCTTCGGATACTATCGACAATGTCAAAACC 104 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| ||||| || || || || || || || |||||||| ||||| || || || Sbjct 105 AA-ATTCAAGACAAGGAGGGTATTCCCCCCGATCAACAACGACTCATCTTTGCTGGTAAG 163 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||| | |||||||| | || ||||||||||| ||| | || |||||||| || |||||| Sbjct 164 CAGTTGGAAGATGGTCGAACCCTTGCCGATTACAACATTCAGAAAGAATCTACTCTGCAT 223 Query 178125 CTTGTTTTGAGACT 178138 || ||| | |||| Sbjct 224 CTGGTTCTTCGACT 237 >seq30797 Length=220 Score = 100 bits (110), Expect = 7e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || ||| | || ||||| || ||||| || |||||||| ||| |||||||||| Sbjct 90 TCGTCAAGACTTTGACTGGAAAGACCATCACTCTTGAGGTGGAGTCCTCCGACACCATCG 149 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || || || |||||||||||||| ||||| || || || |||||||| || || | Sbjct 150 ACAATGTAAAGTCGAAGATTCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGTCTGA 209 Query 178051 TCTTCGCCGG 178060 |||| || || Sbjct 210 TCTTTGCTGG 219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201721608378200