Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq30 143 3e-29 seq23 107 2e-18 >seq30 Length=3970159 Score = 143 bits (158), Expect = 3e-29 Identities = 166/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 ||||||| |||||||| || || ||||| | ||||||| | ||||| |||||||||| Sbjct 3700280 GTACAAACGCGCCGAGGCTTCCTTTTGGACTGCCGAGGAGATTGACCTCTCCAAGGACAT 3700339 Query 116707 GAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | ||| ||||| || |||||||| ||||| || || Sbjct 3700340 GCACGACTGGGACAACAAACTAAACTCTGACGAGAAACACTTCATCAAACACGTCCTTGC 3700399 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||| ||||||||| || || |||||||||||||| || ||||||| ||| | || Sbjct 3700400 CTTCTTCGCCGCCTCGGATGGGATCGTCAACGAGAACCTCATCGAGCGATTCAGTGGCGA 3700459 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| || || ||||| || || || |||||||| ||||| ||| Sbjct 3700460 GGTCCAAGTAGCCGAAGCACGCTGTTTCTACGGATTTCAAATC 3700502 >seq23 Length=1203155 Score = 107 bits (118), Expect = 2e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 || || |||||||| ||||| | || || || || |||||| | | | | ||||| Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | ||||||| ||||| || |||||||| |||||||||| || || |||| || || Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || || || || |||| |||||||| ||||||||||| || |||||| |||| || Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477 Query 40891 CA 40892 || Sbjct 978476 CA 978475 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAA 40769 ||||| || || ||||||||| | || ||||| | | |||| | | | |||| |||| Sbjct 979231 CTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCATTGACAACG-TCAA 979173 Query 40770 GGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGG 40829 || || |||| ||||| || || || ||| |||| || || ||| | |||| || || Sbjct 979172 GGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGATTGATCTTTGCTGG 979113 Query 40830 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || || |||| |||| || ||| | ||||||||||||||| ||||| |||| | Sbjct 979112 TAAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAAAGGAATCCACCTT 979053 Query 40890 GCATCTAGTGTTGCG 40904 ||| || |||||||| Sbjct 979052 GCACCTTGTGTTGCG 979038 Score = 96.9 bits (106), Expect = 4e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40711 CTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAG 40770 ||||| || ||||| ||||| | || || || || |||||| | | | | | ||| Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 | || |||| ||||| ||||| |||||| |||| || || || ||||| | ||| ||| Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||| || || || | ||| ||| | || ||||||||||| ||||| | || || Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 40891 CATCTAGT 40898 ||||| || Sbjct 977890 CATCTCGT 977883 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 ||||| | ||||||||||| ||||| ||||||| || ||| | |||| ||| |||||| Sbjct 978884 AAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCAAA 978825 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||| |||| |||| || || || |||||||| ||||| |||||| |||| || ||| Sbjct 978824 CAGTTGGAAGACGGTCGAACGCTTGCTGACTACAATATCCAAAAGGAGTCCACCCTTCAT 978765 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || ||||| ||||| | || |||||| | |||||| | | |||| |||||| Sbjct 977771 ACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACG-TCAAGGC 977713 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 ||| || | ||||| || || |||||| | |||||||||||||| |||| || || || Sbjct 977712 AAAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGAAA 977653 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | |||||| | || |||||||| ||||| || |||| || || Sbjct 977652 GCAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTTCA 977593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218639699120