Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq23 111 1e-19 >seq23 Length=1203155 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | || | |||||||| | || ||||| |||||||||||||| || Sbjct 978451 CCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCA 978510 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| || || || || || ||||| |||| ||||||||||| || ||||| Sbjct 978511 AGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGG 978570 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 ||||| ||||||||| |||||| || || | || | |||||| | | ||| ||| Sbjct 978571 ATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACC 978630 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730 || | || | ||||||||| ||||| | ||| |||| Sbjct 978631 TCCAAAGTGATCGTTTTGCCAGTCAGTCTGTTTCGAAAA 978669 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCTC 118588 ||||| || | ||||||||| ||||| ||||||||||| ||| | ||| || || || Sbjct 978178 ACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCT-AGAGTACGACCGTCTTC 978236 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || ||||||||| | || || ||||| ||||||||||| || ||||| || || Sbjct 978237 AAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCTG 978296 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | |||| |||||||| || | || || || | || | |||| Sbjct 978297 AATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGAT-TCAACTTCTAGAGTGATGGTTT 978355 Query 118708 TGCCGGTCAG 118717 ||||||| || Sbjct 978356 TGCCGGTAAG 978365 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 ||||| || ||||| ||||||||||| || || ||| ||| || || ||||| ||| Sbjct 977895 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCTTCAAGTTGTTTGCCA 977954 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | ||||||||||| ||||| || || || |||||||||||| ||| || || Sbjct 977955 GCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTC 978014 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAG 118717 || | || | |||||| | | ||| || || | || | |||||| || || || Sbjct 978015 ACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTTTTACCTGTGAG 978070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || ||||| |||||||||||||| || ||||| ||| || Sbjct 977587 ACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCA 977646 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| || || ||||| ||||| || || || |||||||| Sbjct 977647 AGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCATGG 977706 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| ||||| | |||||||| | || | ||||| Sbjct 977707 ATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGTTTTC 977766 Query 118710 CCGGTCA 118716 || |||| Sbjct 977767 CCTGTCA 977773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829940004204