Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 1e-13 >seq23 Length=1203155 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||| |||||||||||||| || ||| |||| || Sbjct 978469 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGGCCGTCTTCA 978528 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || || || || |||| ||||| ||||| ||||| | || |||||||| | Sbjct 978529 AGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGA 978588 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||| || | | | |||| ||||||||||| || ||||| ||| Sbjct 978589 ATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATCGTTTTG 978648 Query 45308 CCCGTCAG 45315 || ||||| Sbjct 978649 CCAGTCAG 978656 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||| || || |||||||| || ||| |||| ||| Sbjct 978760 ACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCTTCC 978819 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| || ||||| ||||| ||||||||||| ||||| | |||||| ||||| Sbjct 978820 AACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCTTGG 978879 Query 45248 ATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 | |||| |||| || | | | |||| | ||| ||||| | ||||| ||||| Sbjct 978880 A-TTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTCTT 978938 Query 45307 GCCCGTCA 45314 ||| |||| Sbjct 978939 GCCAGTCA 978946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074781096827