Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq22 105 6e-18 seq23 96.9 3e-15 >seq22 Length=1232782 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| || ||| || ||||| |||||||| || || || |||| || || || Sbjct 877572 TTCTCAACTCGAGACATGAATAGATCAGGTATCCAAAGCGCATAAAACAAGTCCCGAGCT 877631 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 || || || |||||| ||||| ||| || || |||| || || ||||||||| Sbjct 877632 CGACTTTCTTCCTTGCCGTGATTCTTCCTCAGGTCTAACCAGTCAAAAACATCCGCATGC 877691 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || ||||| ||||| | ||||| || || ||||| || || || || |||||||| || Sbjct 877692 CATGGCTCAAGGTAGATTGCAAAGGCACCAGGTCTTTTGTTACCTCCTTGATCGACATAT 877751 Query 23519 CGGGCCGT 23526 || ||||| Sbjct 877752 CGCGCCGT 877759 >seq23 Length=1203155 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 31200 TTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTG 31259 |||||| ||| | ||||| |||||||||||||| | || || || | ||||||| Sbjct 978669 TTTTCG-AAACAGACTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCA 978611 Query 31260 TCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 | || | ||||| || ||| |||||||||||| | || || ||||||||||||| Sbjct 978610 TTGACAATGTCAAGGCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTC 978551 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 | || || ||||| || || | |||||| || | || || |||||||||| Sbjct 978550 TGATCTTTGCTGGTAAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAA 978491 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | || || || ||||| |||| || |||| | ||||| Sbjct 978490 AGGAGTCCACCCTTCACTTGGTTCTCCGACTTCGCGGCGG 978451 Score = 95.1 bits (104), Expect = 1e-14 Identities = 137/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 31215 TGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA- 31273 ||||||| ||||| ||||| | || || ||| | ||||||| |||| | ||||| Sbjct 977773 TGACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACGTCAAGG 977714 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 || ||| | ||||||||||| | || ||||||||||| || || || || || || Sbjct 977713 CAAAGA-TCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGA 977655 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 || ||| | ||||| | || || ||||| |||||||| |||||||| |||||| Sbjct 977654 AAGCAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTT 977595 Query 31394 CATCTGGTACT 31404 || |||| || Sbjct 977594 CACTTGGTTCT 977584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 31214 CTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAA 31273 || ||||| ||||||||||| | || ||||| | ||||||| | || | || || Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 31274 CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGC 31333 | || |||||||| || | || || || || |||||||| || ||||||||| Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 31334 AAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTT 31393 ||||| | ||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 31394 CATCTGGTACT 31404 ||||| ||||| Sbjct 977890 CATCTCGTACT 977880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765915229040