Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq22 102 1e-16 >seq22 Length=1232782 Score = 102 bits (112), Expect = 1e-16 Identities = 131/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 80665 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 80724 || || || |||| ||| || || || || |||||||||||||| || | ||||| Sbjct 878495 TCTTCTATAACTTGACTGAAGAGCTTCTTGGTTTCCTTGTGTAGGTTACTAATTGCTATC 878554 Query 80725 CTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGC 80783 ||||| || | | ||||||||| ||||| | ||||| || || ||| || |||| || Sbjct 878555 CTGGCAGCAAGCACGGCATAATCCGGATGACGGGTAGT-CATGTAGGCGGCGGTTTCCGC 878613 Query 80784 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 80841 ||||||| |||||| || ||||| || |||||||| | | ||| | ||| || ||| Sbjct 878614 TGCCAGATTGTCCAGCTCGACCGTGGTGACTCCATTGAAAACTCCATTGATGACTTTC 878671 Score = 93.3 bits (102), Expect = 6e-14 Identities = 217/322 (67%), Gaps = 4/322 (1%) Strand=Plus/Plus Query 79222 TCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTA 79281 ||||| ||||| | ||| || || || ||||| | || |||| || ||||| | | Sbjct 876731 TCCCACTCCCACAAATCTGAAGGCTTCACGTTCCACATGTCGAATTGGAGGATACCTTGA 876790 Query 79282 CTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTC 79341 || ||| ||| || | | || |||||||| || ||||| ||| |||||| Sbjct 876791 CTGGCGGGTGAGCCGGGAAAGGTCTCATAAGGACCCTCCTTGATGGCCAATTCATTTGAG 876850 Query 79342 GCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTC 79400 ||||| |||| | | ||||| ||||||||||| | | ||||| ||||| || | Sbjct 876851 GCCTCCAATGAAGCATGATAAAGCGTTTCGAAAATTTCAGTGTTGAGCTTCTTG-GCAGC 876909 Query 79401 TAGGCTATCAAATGGATAATTTAAGAGAAT-AAACGCGTCTGCTAATCCTTGAACACCAA 79459 | | || ||||| || ||| ||| | || || || |||| ||||||||| || | Sbjct 876910 TGGTGATTCGAATGG-TAGTTTTAGAATTTGGAAGGCATCGGCTAGTCCTTGAACCCCGA 876968 Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| || || | |||||| | || || ||| || || || | || || ||||| | Sbjct 876969 TACCAATCGGACGGTGTCTCATGTTCGACTTTTTCGCCTCAGGCACCGGGTAGTAATTGA 877028 Query 79520 TATCTATAATTTTATTGAGATT 79541 | || || || |||| ||||| Sbjct 877029 TGTCGATGATCCTATTCAGATT 877050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268018882680