Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq22 107 3e-18 >seq22 Length=1232782 Score = 107 bits (118), Expect = 3e-18 Identities = 132/178 (74%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 72748 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 72807 || || || |||| ||| || || || || |||||||||||||| || | ||||| Sbjct 878495 TCTTCTATAACTTGACTGAAGAGCTTCTTGGTTTCCTTGTGTAGGTTACTAATTGCTATC 878554 Query 72808 CTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCTGC 72866 ||||| || || | ||||||||| ||||| | ||||| || || ||| || |||| || Sbjct 878555 CTGGCAGCAAGCACGGCATAATCCGGATGACGGGTAGT-CATGTAGGCGGCGGTTTCCGC 878613 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 72924 ||||||| |||||| || ||||| || |||||||| | | ||| | ||| || ||| Sbjct 878614 TGCCAGATTGTCCAGCTCGACCGTGGTGACTCCATTGAAAACTCCATTGATGACTTTC 878671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138470136120