Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq23 102 8e-17 >seq23 Length=1203155 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||||||||| | ||| | ||| ||||||| |||||| || ||||| ||||||||||| || Sbjct 978159 GCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGC 978218 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || | |||||| ||||| || ||||| | || || || || |||||||||| Sbjct 978219 T-AGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAG 978277 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || ||||| || ||| || || | | || | ||||||| | ||| | Sbjct 978278 GGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAA 978337 Query 143136 CTTCAACAGTCACCGTCTTGCCGGT 143160 |||| | ||| | || |||||||| Sbjct 978338 CTTCTAGAGTGATGGTTTTGCCGGT 978362 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | ||| || |||| || |||||||| || ||||||||||| | Sbjct 977569 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCC 977628 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||||| || || || || ||| ||||||| |||||||| ||||| || Sbjct 977629 AAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGG 977688 Query 143078 ATGCCTTCTTTGTC 143091 || ||||| ||||| Sbjct 977689 ATACCTTCCTTGTC 977702 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||| | || | ||||| |||||||| ||||| ||||||||||| | Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||||| |||||||| ||||| | || ||||| || ||||| || || Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984 Query 143078 ATGCCTTCTTTGTC 143091 || || || ||||| Sbjct 977985 ATACCCTCCTTGTC 977998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013848621840