Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq27 105 1e-18 seq25 100 4e-17 seq24 96.9 5e-16 >seq27 Length=880291 Score = 105 bits (116), Expect = 1e-18 Identities = 98/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||||| | ||||||||||||||||||||||| |||||||| ||||| | |||||||| Sbjct 415637 AGATCT-TGCGAGATAACATCCAAGGAATCACAAAGCCAGCCATCCGAAGATTGGCTCGT 415695 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || || |||||||| || | || ||| || | || ||||||| ||| | |||| | ||| Sbjct 415696 CGAGGAGGAGTCAAACGGATATCGGGACTGATATACGAAGAGACTCGAGGTGTTCTCAAG 415755 Query 16568 ATC 16570 || Sbjct 415756 GTC 415758 >seq25 Length=1007441 Score = 100 bits (110), Expect = 4e-17 Identities = 101/129 (78%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 16440 GTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGT 16498 ||||||| | ||||| | || || ||||||||||| |||||||||||||| ||||| | Sbjct 213467 GTCATCGTAAGATCT-TGCGCGACAACATCCAAGGTATCACCAAGCCAGCCATCCGAAGA 213525 Query 16499 CTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT 16558 || || ||||| || ||||||||||| ||||||| || | || || |||| ||| | | Sbjct 213526 CTTGCACGTCGAGGAGGAGTCAAGCGGATCTCTGGTCTGATATACGAGGAGACTCGAGGT 213585 Query 16559 GTTTTGAAG 16567 || ||||| Sbjct 213586 GTCCTGAAG 213594 >seq24 Length=1125812 Score = 96.9 bits (106), Expect = 5e-16 Identities = 84/103 (82%), Gaps = 1/103 (1%) Strand=Plus/Minus Query 16448 AGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGT 16507 |||| |||||| || ||||||||||| ||||||||||| || ||||| | |||||||| Sbjct 253728 AGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCTGCCATCCGAAGATTGGCTCGT 253670 Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || || || ||||||||| |||| || | |||||||||||| Sbjct 253669 CGAGGAGGTGTCAAGCGTATCTCCGGCCTCATCTATGAAGAGA 253627 Score = 96.9 bits (106), Expect = 5e-16 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 16566 AGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTA 16625 ||||||||||| ||| |||||| | || | || || ||||| || ||||| || | Sbjct 464302 AGATCTTCCTCGAGAACGTTATTCGAGACTCGGTCACTTACACCGAACATGCTAAGCGCA 464243 Query 16626 AGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATG 16685 ||||||||||||| ||||| |||| || || | |||||||||||||| | |||||| Sbjct 464242 AGACTGTCACCTCATTGGATGTCGTTTACGCCCTCAAACGTCAAGGCCGCACCCTTTATG 464183 Query 16686 GTTTTGGA 16693 |||| ||| Sbjct 464182 GTTTCGGA 464175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075120455291