Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq22 107 2e-18 >seq22 Length=1232782 Score = 107 bits (118), Expect = 2e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 63942 TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATT 64001 || || || |||| ||| || || || || |||||||||||||| || | ||||| Sbjct 878495 TCTTCTATAACTTGACTGAAGAGCTTCTTGGTTTCCTTGTGTAGGTTACTAATTGCTATC 878554 Query 64002 CTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGC 64060 ||||| || || | ||||||||||||||| | ||||| || || ||| || |||| || Sbjct 878555 CTGGCAGCAAGCACGGCATAATCCGGATGACGGGTAGT-CATGTAGGCGGCGGTTTCCGC 878613 Query 64061 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATT 64096 ||||||| |||||| || ||||| || |||||||| Sbjct 878614 TGCCAGATTGTCCAGCTCGACCGTGGTGACTCCATT 878649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946522544920