Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq23 123 2e-23 >seq23 Length=1203155 Score = 123 bits (136), Expect = 2e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || ||||||||| ||||| | ||||| || || |||| ||| | ||| || | || Sbjct 978067 ACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAGGCT 978008 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||||||||| || || |||||||| ||||| || || || |||||| Sbjct 978007 AAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGCAAA 977948 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 || | || ||| || ||| | | ||||||||||| ||||| ||||| || Sbjct 977947 CAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTAC 977895 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || |||||| ||||| | || ||||| || |||| ||| | ||| || |||| Sbjct 978653 ACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAGGCG 978594 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||||||||||||||| || || || || || || || ||||| || ||||| || || Sbjct 978593 AAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGTAAG 978534 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || ||||||| | | || |||||||||||||| || |||||| | || Sbjct 978533 CAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTTCAC 978474 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | ||| | ||||| || Sbjct 978473 TTGGTTCTCCGACTTCGCGGCGG 978451 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22240 TTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAA 22299 || || || ||||| ||||| | || || ||| | |||| || | ||| | |||| Sbjct 977774 TTGACAGGGAAAACAATCACTTTGGAGGTCGAATCTTCCGACACGATCGACAACGTCAAG 977715 Query 22300 CAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGC 22359 ||| || || |||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct 977714 GCAAAGATCCATGACAAGGAAGGTATCCCCCCCGACCAGCAACGACTGATCTTTGCCGGA 977655 Query 22360 AAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATA 22419 || ||| | || ||| |||||| | | |||||||||||||| ||||||||||| | Sbjct 977654 AAGCAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCAGAAAGAATCCACTCTT 977595 Query 22420 CATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || ||| | || | || |||||| || Sbjct 977594 CACTTGGTTCTCCGTCTCCGTGGAGGTGTT 977565 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| || ||||| || | | || ||| | ||| | |||| Sbjct 979228 ACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCATTGACAACGTCAAGGCC 979169 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || |||||||||||||| |||||||| || |||||||| || | || ||||| || || Sbjct 979168 AAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGATTGATCTTTGCTGGTAAG 979109 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || || || || || ||| | |||| |||||||| ||||| ||||||||| | || Sbjct 979108 CAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAAAGGAATCCACCTTGCAC 979049 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | || |||||| | || || ||| Sbjct 979048 CTTGTGTTGCGACTTCGTGGTGGT 979025 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| ||||| ||||||| ||||| ||| | | || ||| | ||| | | || Sbjct 978362 ACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAAGGCC 978303 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || || ||||| || || ||||||||||| || ||||| || || || || Sbjct 978302 AAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGGAAAG 978243 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | || || || || | | ||||||||||| ||||| || || || | ||| Sbjct 978242 CAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACTTCAT 978183 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | || | || ||||| Sbjct 978182 TTGGTTCTTCGTCTCCGAGGAGG 978160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727554957155