Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq23 159 6e-34 seq15 93.3 8e-14 >seq23 Length=1203155 Score = 159 bits (176), Expect = 6e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || ||||| ||||| || ||||| ||||| | Sbjct 977569 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCC 977628 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| ||||| || || |||| ||| |||||||| || Sbjct 977629 AAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGG 977688 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||||||||||||| ||||| ||||| | ||||| || Sbjct 977689 ATACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACC 977748 Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437 ||||| ||||| ||||| || || Sbjct 977749 TCCAAAGTGATTGTTTTCCCTGT 977771 Score = 156 bits (172), Expect = 8e-33 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| || | ||| | ||||| || ||||||||||| || |||| Sbjct 979026 CCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCC 979085 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| || ||||| || || || || | || ||||| || || ||| Sbjct 979086 AAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGA 979145 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| ||||||||| || |||||||| | ||| || ||| Sbjct 979146 ATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGACT 979205 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGA 68448 |||| ||||||||| || || ||||| | |||| Sbjct 979206 TCCAGGGTGATGGTCTTCCCAGTGAGACTGTTGA 979239 Score = 141 bits (156), Expect = 2e-28 Identities = 156/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| |||||||| || | |||||||| || |||||||| ||||| ||||| || || | Sbjct 978449 TTCCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCG 978508 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||| | ||||| || || || || || | || ||||| || | Sbjct 978509 CAAGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAG 978568 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | |||||||||||||||||||| || |||||||| || |||||||| | || || | Sbjct 978569 GGATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCA 978628 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 | ||||| ||||| ||||| || || || Sbjct 978629 CCTCCAAAGTGATCGTTTTGCCAGTCAG 978656 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||| | || || || || || ||||||||||| ||||| | Sbjct 977863 TTCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAG 977922 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || | ||||||||| | || || || ||||| ||||| | ||||| || || | Sbjct 977923 CCAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGG 977982 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || ||||||||||||||||| ||||| || || |||||||| | || || | Sbjct 977983 GGATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAA 978042 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTG 68447 ||||||| ||||| ||||| || |||||| | ||| Sbjct 978043 CTTCCAAAGTGATCGTTTTACCTGTGAGGCTATTG 978077 Score = 138 bits (152), Expect = 2e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | ||||| || || || ||||| ||||||||||| ||||| | Sbjct 978160 CCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCT 978219 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| || ||||| || || | ||||| ||||| || Sbjct 978220 AGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGG 978279 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || || |||||||| ||||| ||| ||||||||||| | |||||| ||| Sbjct 978280 ATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAACT 978339 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAG 68440 || | ||||||||||| || || || Sbjct 978340 TCTAGAGTGATGGTTTTGCCGGTAAG 978365 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 68331 ATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCC 68390 || || | ||| ||||| || || ||||| |||||||||||||| || ||||||||| Sbjct 979484 ATAAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTG 979543 Query 68391 TCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||||| ||||| | || || ||||||||||| || ||||| || ||||| Sbjct 979544 TCGATAGTGTCAGAAGACTCGACTTCCAAGGTAATTGTTTTGCCGGTGAG 979593 >seq15 Length=1966558 Score = 93.3 bits (102), Expect = 8e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 68336 TCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGAT 68395 || ||||||||| || || ||||||||||| ||||||||||| | |||||| ||||| Sbjct 1871446 TCGTTGTTGGTCCGGGGGGATGCCTTCCTTCTCTTGAATCTTAGTCTTGACATTGTCGAT 1871387 Query 68396 GGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| || ||||| || || | ||||||||| || || || ||| Sbjct 1871386 CGTGTCGGCGGATTCGACCTCGAGGGTGATGGTCTTACCAGTCAGG 1871341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621397735640