Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq23 125 6e-24 >seq23 Length=1203155 Score = 125 bits (138), Expect = 6e-24 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || ||||| || |||| | ||| || || | || || || |||||||||||||| || Sbjct 978448 ATTCCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCC 978507 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||||||||| |||||||| |||| |||||||| ||||||||| Sbjct 978508 GCAAGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGA 978567 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| ||| || || | | |||| |||||||| ||| || Sbjct 978568 GGGATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCC 978627 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 || |||| || | ||||||||| ||||| | ||| |||| Sbjct 978628 ACCTCCAAAGTGATCGTTTTGCCAGTCAGTCTGTTTCGAAAA 978669 Score = 123 bits (136), Expect = 2e-23 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| ||||| ||||||||||| || ||||| ||||||||||||||| ||| Sbjct 977895 GTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCTTCAAGTTGTTTGCCA 977954 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | |||||||||||||| ||||| || || || || ||||| |||||| || Sbjct 977955 GCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCTTGAATCTTAGCCTTC 978014 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 | | |||| |||||||| ||| || || |||| || | |||||| || || || Sbjct 978015 ACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTTTTACCTGTGAG 978070 Score = 105 bits (116), Expect = 6e-18 Identities = 139/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTT 114231 ||| ||||| | ||||| || ||||| ||||||||||| ||| | ||||||| |||| Sbjct 978177 AACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCT-AGAGTACGACCGTCTT 978235 Query 114232 CAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGG 114291 ||||||| || |||||| | || || |||||||| || ||||| || || ||||| || Sbjct 978236 CAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCT 978295 Query 114292 CAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 |||||| || | | || | |||||| | ||||| || || | || | |||| Sbjct 978296 GAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGGTTT 978355 Query 114352 TGCCGGTCAG 114361 ||||||| || Sbjct 978356 TGCCGGTAAG 978365 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||| ||| ||||| || | | ||| || || | || |||||||| ||||||||||||| Sbjct 977564 AAACACCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAAT 977623 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | || || ||| ||||||||| || || || || |||| || || || ||||| | Sbjct 977624 CCGCCAAGGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGG 977683 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 | || || ||||| ||||| |||||| || | | || | ||||||| |||| Sbjct 977684 GGGGGATACCTTCCTTGTCATGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATT 977743 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 |||| |||| || | ||||| || |||| Sbjct 977744 CGACCTCCAAAGTGATTGTTTTCCCTGTCA 977773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420133954526244