Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq23 122 2e-22 >seq23 Length=1203155 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||||| ||| || ||||||||||| ||||| || ||||| || |||||| Sbjct 978757 AGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCT 978816 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || || ||||| ||||||||||||| |||||||| ||||| || ||||| || Sbjct 978817 TCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCT 978876 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 |||||||| ||||||||||| || || | || || || || || || || || ||| Sbjct 978877 TGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTC 978936 Query 288442 TTCCCGGTCA 288451 || || |||| Sbjct 978937 TTGCCAGTCA 978946 Score = 120 bits (132), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | ||| || | ||||| || || |||||||| || || | Sbjct 978156 CATG-CCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAAT 978214 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || || || |||||||| | ||| ||||| ||||| || || ||||||||| Sbjct 978215 CAGCTAGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGG 978274 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 |||||||| ||||||||||| || || || |||||||| || || | || |||| Sbjct 978275 GAGGGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATT 978334 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAG 288452 | ||||| || ||||| || || ||||| || Sbjct 978335 CAACTTCTAGAGTGATGGTTTTGCCGGTAAG 978365 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | ||||||||||||| || ||| |||||||| || || || || Sbjct 977864 TCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGC 977923 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| | |||||| || ||||| || |||||||||||| || Sbjct 977924 CAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGG 977983 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| || || || || || || || || ||||| || || || | ||| || || || Sbjct 977984 GATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAAC 978043 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAG 288452 ||| | |||||||| || || || || Sbjct 978044 TTCCAAAGTGATCGTTTTACCTGTGAG 978070 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| |||| || || | |||| ||| || ||||| || || ||||| || Sbjct 978450 TCCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGC 978509 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| |||||||| | ||| || || || |||||||||||||| || || Sbjct 978510 AAGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGG 978569 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||| ||||| || || || |||||||| || || || || || | ||| || || || Sbjct 978570 GATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCAC 978629 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAG 288452 || | |||||||| || || ||||| Sbjct 978630 CTCCAAAGTGATCGTTTTGCCAGTCAG 978656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653085053986