Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq23 102 9e-17 >seq23 Length=1203155 Score = 102 bits (112), Expect = 9e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||||| | ||| | |||||||| | ||| ||||||||| || ||||||||||| Sbjct 978160 CCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCT 978219 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || |||| || || ||||| |||||||| || || ||||| || |||| || Sbjct 978220 AGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGG 978279 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 42160 | | ||| || ||| ||| | || | | ||| | | | ||||| ||||| || Sbjct 978280 ATTCCCTCTTTATCC-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAAC 978338 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGC 42188 || | |||||||||||||| || ||| Sbjct 978339 TTCTAGAGTGATGGTTTTGCCGGTAAGC 978366 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||| || | ||| |||||||||||| ||||| || || || || || |||| || Sbjct 978469 ACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGGCCGTCTTCA 978528 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||||||||| || || || ||||||||||| | || | || ||||||| | || Sbjct 978529 AGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTGT-CTTG 978587 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | |||| | |||| | | | |||||| || ||||| || | ||||| ||||| Sbjct 978588 AATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTGATCGTTTT 978647 Query 42179 GCCCGTTAG 42187 ||| || || Sbjct 978648 GCCAGTCAG 978656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212209256080