Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq23 118 1e-21 >seq23 Length=1203155 Score = 118 bits (130), Expect = 1e-21 Identities = 159/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||| | || || || | |||| || || || |||||||||||||| || || Sbjct 978451 CCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCA 978510 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||||||||| ||||| || ||| | || || ||||||||||| ||||| Sbjct 978511 AGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGG 978570 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || ||||| ||||| ||| ||| || | || || || ||||| Sbjct 978571 ATGCCTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACC 978630 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAA 64436 || | ||| | || ||||| |||| | ||| |||||| Sbjct 978631 TCCAAAGTGATCGTTTTGCCAGTCAGTCTGTTT-CGAAAA 978669 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| |||||||||||||| || | |||||| | |||||||||||| Sbjct 977593 TGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTCAAGCTGC 977652 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || || ||||||||||| || || ||||| || || || || ||| Sbjct 977653 TTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCATGGATCTTT 977712 Query 64361 TGCTTTAC 64368 ||| || Sbjct 977713 GCCTTGAC 977720 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || ||||| ||||||||||| || | || || |||| Sbjct 978174 AAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTC 978233 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| ||||| || || |||| || ||||| || |||||||| ||||| ||||| || Sbjct 978234 TTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATC 978293 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| || || | || || | || ||||||| ||| | ||| Sbjct 978294 CTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGGT 978353 Query 64411 CTTGCCGGT 64419 |||||||| Sbjct 978354 TTTGCCGGT 978362 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| || ||||| ||||| ||||||||||| || | ||| ||| | ||| Sbjct 977880 AGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCT 977939 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| || ||||| || ||||||| ||||| || || || || || || || || ||| Sbjct 977940 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCT 977999 Query 64352 TGTATTTT 64359 || || || Sbjct 978000 TGAATCTT 978007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644256636280