Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq23 127 2e-24 >seq23 Length=1203155 Score = 127 bits (140), Expect = 2e-24 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | || | ||| || || | | | ||||||||||||||||||||||| Sbjct 978451 CCGCCGCGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCA 978510 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| ||||| | | |||| |||||||| ||||||||||| Sbjct 978511 AGGGTGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGG 978570 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||| | || |||| || | |||||||| ||||||| Sbjct 978571 ATGCCTTCCTTGTC-TTGAATTTTCGCCTTGACATTG-TCAATGGTGTCGGAGGACTCCA 978628 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 |||| | || | |||||| |||||||| | ||| |||| Sbjct 978629 CCTCCAAAGTGATCGTTTTGCCAGTCAGTCTGTTTCGAAAA 978669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||| ||| | || ||||| | | | ||||||||||| || |||||||| Sbjct 978742 CCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCA 978801 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | ||||| || | |||| | ||||||||||||||||| Sbjct 978802 AGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGG 978861 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| |||||||| |||||| ||| | | || | ||||| | ||||| ||| Sbjct 978862 ATACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACC 978921 Query 138568 TCGACCGTCAGCGTTTTACCAGTCA 138592 || | || | || || ||||||| Sbjct 978922 TCTAGAGTAATGGTCTTGCCAGTCA 978946 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | ||| | | || |||||||| |||||||| || | Sbjct 977865 CCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCC 977924 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || |||||||| || | | || ||||||||||| ||||| || Sbjct 977925 AAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGG 977984 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || |||| || | |||||||| ||||| | Sbjct 977985 ATACCCTCCTTGTC-TTGAATCTTAGCCTTCACATTG-TCAATGGTGTCGGAGGACTCAA 978042 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAG 138593 | || | || | ||||||||| || || Sbjct 978043 CTTCCAAAGTGATCGTTTTACCTGTGAG 978070 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 138400 CGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG 138459 ||||| || | || | | | || |||||||| |||||||||||| || ||||| | Sbjct 979038 CGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTACGACCG 979097 Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || | ||| ||||| | | |||| | |||||||| ||||| || |||||||| ||| Sbjct 979098 TCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACCTTCCTTG 979157 Query 138520 TCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCA 138577 || ||| | || | || | ||| || | |||||| | ||||| || || | || | Sbjct 979158 TC-TTGAATCTTGGCCTTGACGTTG-TCAATGGTGTCAGATGACTCGACTTCCAGGGTGA 979215 Query 138578 GCGTTTTACCAGTCAGAGTTTTTACAAA 138605 || || ||||| ||| | || | ||| Sbjct 979216 TGGTCTTCCCAGTGAGACTGTTGAAAAA 979243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261860314640