Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq23 86.0 4e-12 >seq23 Length=1203155 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 |||| ||||| | | | ||| |||||||| ||||| || ||||| ||||||||||| | Sbjct 978158 TGCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAG 978217 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || ||| | | ||||||| | ||| || |||||| | || | |||||||| ||| Sbjct 978218 CT-AGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGA 978276 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTC 15125 || ||||| || || || ||| ||| || || | || || || || | || ||| Sbjct 978277 GGGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTC-CGATGATTC 978335 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAG 15155 || |||| || |||||||| || || || Sbjct 978336 AACTTCTAGAGTGATGGTTTTGCCGGTAAG 978365 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || ||||||| | | || ||||||||||| || || ||||| || ||||| || Sbjct 978742 CCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCA 978801 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| ||||||| || |||||||| ||| | ||||| ||||||||||| || Sbjct 978802 AGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGG 978861 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || ||||| |||||| ||| || | || || || || | || || Sbjct 978862 ATACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACC 978921 Query 15130 TCTAAGGTAATGGTTTTACCTGTCA 15154 |||| |||||||| || || |||| Sbjct 978922 TCTAGAGTAATGGTCTTGCCAGTCA 978946 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATT 15031 |||||| ||||| || ||||| ||||||||||| || || | | | | ||||| | || Sbjct 977888 ATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGG-TACGCCCATCTTCAAGTT 977946 Query 15032 GTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTT 15091 ||||||||||| | || | ||||||||| || || || || |||||||| ||| | Sbjct 977947 GTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCTTGAATCT 978006 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | || ||| | || || || ||| || || || || || || |||||||||| Sbjct 978007 TAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTTTTACCTG 978066 Query 15152 TCAG 15155 | || Sbjct 978067 TGAG 978070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391621052795