Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq23 109 5e-19 >seq23 Length=1203155 Score = 109 bits (120), Expect = 5e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| || |||| || |||||||||||||| || || ||| Sbjct 979023 ATACCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCG 979082 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || |||||||| || || || | |||||||| || || ||||| Sbjct 979083 GCCAAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGG 979142 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || |||||||| || |||| || | || | |||||| || ||||| Sbjct 979143 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGATGACTC 979201 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 |||||| || || | || || || || ||| | || | ||| Sbjct 979202 GACTTCCAGGGTGATGGTCTTCCCAGTGAGACTGTTGAAAAA 979243 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || |||||||||||||| || || | ||| | || ||||| || Sbjct 978765 ATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCTTCCAACTG 978824 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 ||| |||||| | |||||||| || |||||||| || || || ||||| ||||| ||||| Sbjct 978825 TTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCTTGGATTTT 978884 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||| | || | || | ||||| ||||||||||| || ||||||| || ||||| | Sbjct 978885 GGCTTTCA-CGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTCTTGCCAG 978943 Query 45316 T 45316 | Sbjct 978944 T 978944 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| ||||| | | || ||||| || || |||||||||||||| || ||||| Sbjct 977862 ATTCCTCCTCGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCA 977921 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | |||||| || ||| | || | || || || ||||| Sbjct 977922 GCCAAGGTACGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGG 977981 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || |||||||| || || | || | ||||||||| ||||| Sbjct 977982 GGGATACCCTCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCA 978041 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 ||||| | ||| | |||||| || || || Sbjct 978042 ACTTCCAAAGTGATCGTTTTACCTGTGAG 978070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002708446520