Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq23 120 7e-22 >seq23 Length=1203155 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || |||||||||| |||||| |||||||| || | |||||| Sbjct 977880 AGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCT 977939 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| ||||||||||| || ||||| || || || || Sbjct 977940 TCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCT 977999 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | |||||| | | || || ||||| |||||||| Sbjct 978000 TGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTT 978059 Query 199598 TTACCCGTGAG 199608 ||||| ||||| Sbjct 978060 TTACCTGTGAG 978070 Score = 116 bits (128), Expect = 9e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || ||||||||||||| |||||| ||||| | ||| | || ||||| || ||| Sbjct 978184 TGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGTTGC 978243 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 ||||| ||||| || || ||||| || || ||| ||||| ||| ||||||||||| Sbjct 978244 TTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCTGAATCTTG 978303 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||||| |||| |||||| | || ||| || || | ||||| || || || || Sbjct 978304 GCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGTGATGGTTTTGCCGGTA 978363 Query 199607 AG 199608 || Sbjct 978364 AG 978365 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||| || || | ||| || || ||||||||||| | ||||||||| || | || Sbjct 978457 CGAAGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTG 978516 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||| || || ||||| |||||||||||||||||| || ||| Sbjct 978517 CGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCT 978576 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || ||||| || ||| || || | |||||| | | || || ||||| Sbjct 978577 TCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAA 978636 Query 199589 GTGATCGTCTTACCCGTGAG 199608 |||||||| || || || || Sbjct 978637 GTGATCGTTTTGCCAGTCAG 978656 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || || || | |||||| || ||||| || | |||||| Sbjct 977584 AGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCT 977643 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| || || |||||||| || || ||||| || Sbjct 977644 TCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCA 977703 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| ||||| | | ||| || ||||| ||||| || Sbjct 977704 TGGATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGTT 977763 Query 199598 TTACCCGT 199605 || || || Sbjct 977764 TTCCCTGT 977771 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| ||||| |||||||||||| | |||||||| | || ||||| ||||||||| | || Sbjct 977670 ACTGATCTTTGCCGGAAAGCAGCTTGAAGATGGTCGCACCTTGGCGGATTACAACATTCA 977611 Query 200994 GAAAGAGTCTACTCTTCACCTTGTT 201018 |||||| || ||||||||| | ||| Sbjct 977610 GAAAGAATCCACTCTTCACTTGGTT 977586 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || ||||||||||||| ||||||||||| | || | || ||| Sbjct 978757 AGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCT 978816 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||| || || |||||||| | ||||| ||||||||| || || ||| || Sbjct 978817 TCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCT 978876 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || |||||| |||| ||||| | | || || || | || || || Sbjct 978877 TGGAT-TTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGT 978935 Query 199597 CTTACCCGT 199605 ||| || || Sbjct 978936 CTTGCCAGT 978944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920285870829