Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq30 140 3e-28 seq23 113 5e-20 >seq30 Length=3970159 Score = 140 bits (154), Expect = 3e-28 Identities = 165/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||||||||| ||||| || || || || ||| | || || || || | ||| ||||| Sbjct 3700502 GATTTGAAATCCGTAGAAACAGCGTGCTTCGGCTACTTGGACCTCGCCACTGAATCGCTC 3700443 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 || || || ||||||||||| || || ||||||||| ||||| || ||||| ||||| Sbjct 3700442 GATGAGGTTCTCGTTGACGATCCCATCCGAGGCGGCGAAGAAGGCAAGGACGTGTTTGAT 3700383 Query 133338 GAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| || ||||| ||| | | ||||||||| || |||||||||| ||||| Sbjct 3700382 GAAGTGTTTCTCGTCAGAGTTTAGTTTGTTGTCCCAGTCGTGCATGTCCTTGGAGAGGTC 3700323 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 | ||||||| | |||||||| || |||||||| ||||||| Sbjct 3700322 AATCTCCTCGGCAGTCCAAAAGGAAGCCTCGGCGCGTTTGTAC 3700280 >seq23 Length=1203155 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||| || | || |||||| | | |||| | | |||| | |||| Sbjct 978944 ACTGGCAAGACCATTACTCTAGAGGTCGAGTCTTCTGACACGATCGACAACG-TGAAAGC 978886 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 ||||||| ||||||||||| || || | ||||||||||| | || | ||| ||||| Sbjct 978885 CAAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCAA 978826 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||| |||| |||| || || || |||||||| ||||||||||| | || || || Sbjct 978825 ACAGTTGGAAGACGGTCGAACGCTTGCTGACTACAATATCCAAAAGGAGTCCACCCTTCA 978766 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || ||| || |||| || Sbjct 978765 TTTGGTCCTCCGTCTGCGAGGGGG 978742 Score = 105 bits (116), Expect = 7e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 ||||| || ||||| ||||| | || || ||| || |||||| | | | | | || Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | || || | ||||| ||||| || ||| | || |||||||| ||||||| ||| ||| Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 ||||| || || || | ||| ||| | || |||||||||||||||||| | || || Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | |||| || Sbjct 977890 CATCTCGTACTCCGTCTCCGAGGAGG 977865 Score = 100 bits (110), Expect = 3e-16 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 38264 GCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTA 38322 ||| || |||||||||||||| | || || || | | |||| | | | |||| | | Sbjct 978366 GCTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACG-TGA 978308 Query 38323 AAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGG 38382 | | || || | || ||||||||||| || |||| |||||||| || |||| ||| | Sbjct 978307 AGGCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTG 978248 Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442 | || || || || |||| || || || || ||||||||||||||||| | || | Sbjct 978247 GAAAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACAC 978188 Query 38443 TGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | |||||||| || ||| | |||| ||| Sbjct 978187 TTCATTTGGTTCTTCGTCTCCGAGGAGGC 978159 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323 ||||| || || ||||||||| | || |||||| | | |||| | | | |||| | || Sbjct 979231 CTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCATTGACAACG-TCAA 979173 Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 | || || | ||||| || || |||||| | || |||||||| | || | || || Sbjct 979172 GGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGATTGATCTTTGCTGG 979113 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 || || |||| |||| || ||| | |||||||||||||||||||||| | || | Sbjct 979112 TAAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAAAGGAATCCACCTT 979053 Query 38444 GCATTTGGTGCTGCG 38458 ||| | ||| |||| Sbjct 979052 GCACCTTGTGTTGCG 979038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324 || || |||||||| ||||| | || || ||| || |||||| | | | | | || Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597 Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384 | ||||| | ||||| || || || || | ||||| ||||| || || | || || Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537 Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444 || || || || |||| |||||||| ||||||||||| |||||||| | || || Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477 Query 38445 CATTTGGTGCTGCG 38458 || ||||| || || Sbjct 978476 CACTTGGTTCTCCG 978463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172256062080