Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20]
87 sequences; 66,403,143 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq30 140 3e-28
seq23 113 5e-20
>seq30
Length=3970159
Score = 140 bits (154), Expect = 3e-28
Identities = 165/223 (74%), Gaps = 3/223 (1%)
Strand=Plus/Minus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||||||||| ||||| || || || || ||| | || || || || | ||| |||||
Sbjct 3700502 GATTTGAAATCCGTAGAAACAGCGTGCTTCGGCTACTTGGACCTCGCCACTGAATCGCTC 3700443
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
|| || || ||||||||||| || || ||||||||| ||||| || ||||| |||||
Sbjct 3700442 GATGAGGTTCTCGTTGACGATCCCATCCGAGGCGGCGAAGAAGGCAAGGACGTGTTTGAT 3700383
Query 133338 GAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394
||| || ||||| ||| | | ||||||||| || |||||||||| |||||
Sbjct 3700382 GAAGTGTTTCTCGTCAGAGTTTAGTTTGTTGTCCCAGTCGTGCATGTCCTTGGAGAGGTC 3700323
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437
| ||||||| | |||||||| || |||||||| |||||||
Sbjct 3700322 AATCTCCTCGGCAGTCCAAAAGGAAGCCTCGGCGCGTTTGTAC 3700280
>seq23
Length=1203155
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| ||||| || | || |||||| | | |||| | | |||| | ||||
Sbjct 978944 ACTGGCAAGACCATTACTCTAGAGGTCGAGTCTTCTGACACGATCGACAACG-TGAAAGC 978886
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
||||||| ||||||||||| || || | ||||||||||| | || | ||| |||||
Sbjct 978885 CAAAATCCAAGACAAAGAGGGTATCCCTCCGGACCAACAGCGATTGATCTTCGCAGGCAA 978826
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|||| |||| |||| || || || |||||||| ||||||||||| | || || ||
Sbjct 978825 ACAGTTGGAAGACGGTCGAACGCTTGCTGACTACAATATCCAAAAGGAGTCCACCCTTCA 978766
Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || ||| || |||| ||
Sbjct 978765 TTTGGTCCTCCGTCTGCGAGGGGG 978742
Score = 105 bits (116), Expect = 7e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324
||||| || ||||| ||||| | || || ||| || |||||| | | | | | ||
Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
| || || | ||||| ||||| || ||| | || |||||||| ||||||| ||| |||
Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
||||| || || || | ||| ||| | || |||||||||||||||||| | || ||
Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891
Query 38445 CATTTGGTGCTGCGTTTGAGAGGCGG 38470
||| | || || ||| | |||| ||
Sbjct 977890 CATCTCGTACTCCGTCTCCGAGGAGG 977865
Score = 100 bits (110), Expect = 3e-16
Identities = 149/209 (71%), Gaps = 2/209 (1%)
Strand=Plus/Minus
Query 38264 GCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTA 38322
||| || |||||||||||||| | || || || | | |||| | | | |||| | |
Sbjct 978366 GCTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACG-TGA 978308
Query 38323 AAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGG 38382
| | || || | || ||||||||||| || |||| |||||||| || |||| ||| |
Sbjct 978307 AGGCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTG 978248
Query 38383 GCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGC 38442
| || || || || |||| || || || || ||||||||||||||||| | || |
Sbjct 978247 GAAAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACAC 978188
Query 38443 TGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
| |||||||| || ||| | |||| |||
Sbjct 978187 TTCATTTGGTTCTTCGTCTCCGAGGAGGC 978159
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAA 38323
||||| || || ||||||||| | || |||||| | | |||| | | | |||| | ||
Sbjct 979231 CTCACTGGGAAGACCATCACCCTGGAAGTCGAGTCATCTGACACCATTGACAACG-TCAA 979173
Query 38324 AGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
| || || | ||||| || || |||||| | || |||||||| | || | || ||
Sbjct 979172 GGCCAAGATTCAAGACAAGGAAGGTATTCCCCCGGATCAACAGCGATTGATCTTTGCTGG 979113
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
|| || |||| |||| || ||| | |||||||||||||||||||||| | || |
Sbjct 979112 TAAGCAATTGGAAGACGGTCGTACCTTGGCCGACTACAACATCCAAAAGGAATCCACCTT 979053
Query 38444 GCATTTGGTGCTGCG 38458
||| | ||| ||||
Sbjct 979052 GCACCTTGTGTTGCG 979038
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 38265 CTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAA 38324
|| || |||||||| ||||| | || || ||| || |||||| | | | | | ||
Sbjct 978656 CTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCTCCGACACCATTGACAATGTCAAG 978597
Query 38325 GAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGC 38384
| ||||| | ||||| || || || || | ||||| ||||| || || | || ||
Sbjct 978596 GCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCTGGT 978537
Query 38385 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTG 38444
|| || || || |||| |||||||| ||||||||||| |||||||| | || ||
Sbjct 978536 AAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACAACATTCAAAAGGAGTCCACCCTT 978477
Query 38445 CATTTGGTGCTGCG 38458
|| ||||| || ||
Sbjct 978476 CACTTGGTTCTCCG 978463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172256062080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |