Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq23 116 1e-20 seq27 102 3e-16 >seq23 Length=1203155 Score = 116 bits (128), Expect = 1e-20 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || |||||||| || ||| | || ||||| || || || | |||||| | | || Sbjct 978070 CTCACAGGTAAAACGATCACTTTGGAAGTTGAGTCCTCCGACACCATTGACAATGTGAAG 978011 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || |||||||| ||||| || || || || |||||||| ||| | |||||| | || Sbjct 978010 GCTAAGATTCAAGACAAGGAGGGTATCCCCCCGGATCAACAGCGTCTCATTTTCGCTGGC 977951 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 ||||||||||||||||| | || ||||| ||||| || || | ||||| | || ||| Sbjct 977950 AAACAACTTGAAGATGGGCGTACCTTGGCTGATTACAACATCCAAAAGGAATCTACTCTT 977891 Query 391251 CACTTAGTATTAAGACTGAGAGGATAAATACAttttttt 391289 || | ||| | | || ||||| ||| || ||||| Sbjct 977890 CATCTCGTACTCCGTCTCCGAGGAGGAATGCAAATTTTT 977852 Score = 107 bits (118), Expect = 8e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 391048 TAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCAT 391107 |||| | | |||||| || | ||||||||| ||||| || ||| | || || || || | Sbjct 978678 TAATCATTGTTTTCGA-AACAGACTGACTGGCAAAACGATCACTTTGGAGGTGGAGTCCT 978620 Query 391108 CTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATC 391167 | || | |||||| | | || ||||||||||| |||||||| || ||||| || | Sbjct 978619 CCGACACCATTGACAATGTCAAGGCGAAAATTCAAGACAAGGAAGGCATCCCTCCGGACC 978560 Query 391168 AACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATA 391227 | || ||| | || || | || || ||||||||||| || | || | ||||| || | Sbjct 978559 AGCAGCGTCTGATCTTTGCTGGTAAGCAACTTGAAGACGGCCGCACCCTTGCGGACTACA 978500 Query 391228 ATATTGATAAGGATGCAACACTTCACTTAGT 391258 | ||| | ||||| | || |||||||| || Sbjct 978499 ACATTCAAAAGGAGTCCACCCTTCACTTGGT 978469 Score = 105 bits (116), Expect = 3e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || || ||||| || ||||| || ||||||||||| || | ||| || | || Sbjct 978365 CTTACCGGCAAAACCATCACTCTAGAAGTTGAATCATCGGACACCATCGACAACGTGAAG 978306 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || ||||| ||||| || ||||| ||||| |||||||| || | |||||| | || Sbjct 978305 GCCAAGATTCAGGATAAAGAGGGAATCCCTCCCGATCAACAGCGCCTTATTTTCGCTGGA 978246 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTT 391250 || ||||||||||| || | ||| | || ||||| || || | ||||| | |||||| Sbjct 978245 AAGCAACTTGAAGACGGTCGTACTCTAGCTGATTACAACATCCAAAAGGAGTCTACACTT 978186 Query 391251 CACTTAGT 391258 || || || Sbjct 978185 CATTTGGT 978178 >seq27 Length=880291 Score = 102 bits (112), Expect = 3e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 451321 TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC 451380 |||||| ||||||||||| ||||| |||||||| || || ||||||||||| || || || Sbjct 469149 TGCAGTTATTACTGTTCCTGCTTACTTCAATGACGCCCAGCGGCAAGCAACCAAGGACGC 469090 Query 451381 AGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || ||||| || ||||||| || | || || |||||||| || |||||||| Sbjct 469089 CGGTGCAATTGCCAAGCTAGATGTTCTACGTGTCATCAACGAACCTACCGCTGCTGCTCT 469030 Query 451441 AGCATATGG 451449 |||||||| Sbjct 469029 CGCATATGG 469021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975716197691396