Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq41 174 2e-38 seq25 143 3e-29 >seq41 Length=3786832 Score = 174 bits (192), Expect = 2e-38 Identities = 528/802 (66%), Gaps = 24/802 (3%) Strand=Plus/Plus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 ||||| ||||| | || ||||| || || ||||| |||||||| || | || |||||| Sbjct 1652181 GCGGCCTGGACGGCAGCACCGTAAGCAACAGCCTCGTCGGGGTTGATGCTCTTGTTCAGT 1652240 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 | || || | || || | || ||| ||||| || ||||| || |||||| Sbjct 1652241 TGGCGGCCACCGAAGAAGTCAGACACCAGGGATTGGATTTTGGGAATTCGCGTTGATCCA 1652300 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 ||||| | ||||| || | || |||| || |||||||| | ||| || || Sbjct 1652301 CCGACAAGGACGATATCCTCAACCTTCGCCTTGTCGATCTTGGCGTCCTTGAGGACCTTG 1652360 Query 7205 TCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGG 7264 |||||||| || | | | ||||| | | || ||||| || || || Sbjct 1652361 TCGACAGGGTCAAGAGTTGATCGGAAGGTTTGAGCGTTGATCTCTTCAAATCGGGCTCGA 1652420 Query 7265 GTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG- 7323 | |||| | |||| ||| || | | | | || || | || | ||| ||||| Sbjct 1652421 GAGATGGCAGACGAGAAGTCAGTTCCTTGGAAGAGGGAGTCGACCTCGACGGTGGTTTGA 1652480 Query 7324 -TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGG 7382 || || || || | |||||||| || ||||| || || | || | |||||||||| Sbjct 1652481 GTGACG--GATGAAAGTGTTCGCTTGGCTCGCTCGCATGCTGAGCGAAGTCGACGAAGGG 1652538 Query 7383 CACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGT 7441 |||| | | ||| ||||| ||||| ||| || || ||||| ||| | ||||| Sbjct 1652539 CACGGGCATCACCATCGATATCAATCTTAGTTTTTCGCTTGAACTCGTTCTTA-AAGTGC 1652597 Query 7442 CGAAGGAGTCTCG-AATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTT 7500 |||||| | || ||||| || || || |||||||| || || || || || || || Sbjct 1652598 TCAAGGAG-CGCGTTGTCGAAGTCCTCGCCTCCCAAGTGAGTGTCACCGGCAGTAGCCTT 1652656 Query 7501 GACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 || |||| ||| || ||||| | | || ||||| || |||||||| |||| Sbjct 1652657 AACAGTGAAGACACCACCGGCAATGGAAAGGAGTGAGACATCGAAAGTACCACCTCCCAA 1652716 Query 7561 GTCAAAAATGAGTA-CGTTCG---TATCGTCGTCTTTGTT--------CTT-ATCGAGAC 7607 ||| ||||| || | |||||| | | || ||||| || ||| |||||| Sbjct 1652717 GTCGAAAATCAGGACCGTTCGCTCTTTTTTC-TCTTTCTTGTCACTAGCTTCGCCGAGAC 1652775 Query 7608 CGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCA 7666 | || || || || || || || || ||||| || |||||||| ||| | ||||||||| Sbjct 1652776 CATAGGCAATGGCAGCGGCGGTGGGCTCATTGATGATACGAAGCACA-TCTAGGCCAGCA 1652834 Query 7667 ATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTT 7726 || | | || || || || | ||||| || ||||| |||||||| || ||||| Sbjct 1652835 ATGGCACCGGCGTCCTTGGTAGACAACCGTTGGGAGTCGTTGAAGTAGGCGGGCACCGTG 1652894 Query 7727 ACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTA 7786 | || || | | |||||| ||| || || | | || || | || || | |||||| Sbjct 1652895 ATTACGGCCTTCTTGACTTCCTTGCCAAGTTTGGTCTCGGCAGTCTCCTTAAGCTTGGTA 1652954 Query 7787 AGAACCATCGATGAAATCTCTT 7808 || ||||| | || ||||||| Sbjct 1652955 AGTACCATGGCAGAGATCTCTT 1652976 >seq25 Length=1007441 Score = 143 bits (158), Expect = 3e-29 Identities = 173/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 7921 GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCAT 7980 |||| ||| |||| ||| || || ||||| |||||||| || |||| | |||||||| Sbjct 562770 GTCCTCAAATTTTCGTCCAATGAGGCGCTTAGCATCAAAGACGGTGTGGTGAGGGTTCAT 562711 Query 7981 GGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGAC 8040 ||| ||||||||| || || || || || ||||| || | | | | || || ||||| Sbjct 562710 GGCCACTTGGTTCTTAGCGGCATCACCAATGAGACGCTC-TGAGT--CAGTGAAAGCGAC 562654 Query 8041 GTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 ||| || ||||| || ||||| || ||||| || ||||| || || || || |||||||| Sbjct 562653 GTAAGACGGGGTGGTGCGATTTCCCTGGTCATTGGCAATGATCTCGACACGATCGTTTTG 562594 Query 8101 CCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTGAG 8153 ||| || || ||||| || || || || || | ||||| |||| ||| ||| Sbjct 562593 CCATACACCAACGCAAGAGTAGGTGGTACCAAGGTCAATTCCGACGGCTGGAG 562541 Score = 122 bits (134), Expect = 1e-22 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 7127 GGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTT 7186 ||||| || || || |||||||| | |||||||| | || || | ||| |||||||| Sbjct 563770 GGGATACGAGTGGAACCACCGACAAGTACGATTTCGTGGACGTTGGCTTTGTCGATCTTG 563711 Query 7187 GAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGT 7246 || || || || |||||||||||| |||||| || | ||| | |||| || || Sbjct 563710 GAATCCCGGAGGACTTTTTCGACAGGCTCCATAGTCTTCCTGAAGAGGTCCTGGCAGAGC 563651 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 || || ||||| ||||| || | ||| || ||||| || | || ||| | | || || Sbjct 563650 TCTTCGAAACGGGCACGTGTCAGGGAGGTGTAGAAGTCGATACCTTCGAAGAGAGAGTCG 563591 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || || | ||||| || | || ||||| || || || || || || || || || Sbjct 563590 ATCTCGATCGAGGTTTGAGCGGCAGAGGATAAGGTACGTTTAGCACGTTCGCAAGCAGTG 563531 Query 7367 CGTAAACGACGAAGGGCACG 7386 || | |||||||| ||||| Sbjct 563530 CGCAGACGACGAACTGCACG 563511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132109293080