Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq22 111 2e-19 seq34 82.4 9e-11 >seq22 Length=1232782 Score = 111 bits (122), Expect = 2e-19 Identities = 407/628 (65%), Gaps = 22/628 (4%) Strand=Plus/Plus Query 105947 GTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATT 106006 ||||| || |||||||| || ||| || | |||||| || |||||||| ||||| Sbjct 876614 GTGTATGGCTCAAAGCACTCGTTAAATCCAAGGATTTGACTCGTCGAGGCTGTCGGCATA 876673 Query 106007 GGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCC 106066 || || | |||||| || || | ||| | ||||| ||| || | ||| Sbjct 876674 GGCGCGAGCAAAAGGGAATTCCGGATACCAGTCGTCTTGACCTTTTCTTTCAAGCTGTCC 876733 Query 106067 CAGTCGTAGTTGAGCTT--GGTTTCACCTTCCCACATATCAAATTGAAGCACCCCTTGGG 106124 || || | | || || ||||| |||| |||| || ||||| || | ||||| Sbjct 876734 CACTCCCACAA-ATCTGAAGGCTTCACGTTCC-ACATGTCGAATTGGAGGATACCTTGAC 876791 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA--GCCAATTCACAGCT 106182 | ||| || || ||| |||||||| | ||| | ||| | ||||||||| Sbjct 876792 TGGCGGGTGAGCCGGGAAAGGTCTCATAAGGACCCTC--CTTGATGGCCAATTCATTTGA 876849 Query 106183 CGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 ||||||| || || ||||| | ||||| || || || || | || |||||| | Sbjct 876850 GGCCTCCAATGAAGCATGATAAAGCGTTTCGAAAATTTCAGTGTTGAGCTTCTTGGCAGC 876909 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAAATA-AATACATCCGCGAGACCTTGAACACCCA 106301 ||| || |||| |||| | || | || |||| || || |||||||| || | Sbjct 876910 TGGTGATTCGAATG-GTAGTTTTAGAATTTGGAAGGCATCGGCTAGTCCTTGAACCCCGA 876968 Query 106302 AACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAAT 106358 |||||| || | ||||| ||| || |||||| ||| |||| || || || ||| Sbjct 876969 TACCAATCGGACGGTGTCTCATGTTCGACTTTTTCGC---CTCAGGCACCGGGTAGTAAT 877025 Query 106359 TTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTT 106418 | |||| |||| | || ||||| | ||| || ||| |||| ||||||||||||| Sbjct 877026 TGATGTCGATGATCCTATTCAGATTATAGGTGACCTCCTTGGTGACTTCATGAAGTTTT- 877084 Query 106419 CATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAAT 106478 | |||| || | | ||| | | | | || |||||||| || || |||| Sbjct 877085 -----TGAAAATTGTATTTACCATCAACAATAAAAGTGGGTAGGGCGATCGAGGCTAAAT 877139 Query 106479 TGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAAC 106538 | ||||||||| || || | | ||| || | ||| || || || | |||||| Sbjct 877140 TACAAACAGCCACTTCGTCGGGGGCAGAGTATTCAATAATCTCCGTGCAAAGGTTGGAGG 877199 Query 106539 TCTTAATCGTCCCCAAATTCTTTTGGTT 106566 || || || || | ||||||||||| Sbjct 877200 ATTTGATGGTTCCGAGGTTCTTTTGGTT 877227 >seq34 Length=422895 Score = 82.4 bits (90), Expect = 9e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 169371 AGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTT 169430 ||||| || || || |||| |||||| || | ||| || ||||| || || || | || | Sbjct 24400 AGAGGGAATACACCGTAGTTATCACGCCCGATGACTGAAAGACCGGCAACTGCTAAGGAT 24459 Query 169431 TTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCCGCC 169490 || ||||| || |||||||| | || || ||||| | | | | || | ||| || || Sbjct 24460 TTGGCTGAGTCTCCCTCCGTCAGGATCAGTGTACAATCTGCGGCTTTCTTCGTTCCAGCA 24519 Query 169491 TTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGA-CTTGCGAGCACCATCGGT 169549 || ||||| || |||| || ||||||||| || || | | | | |||||||| Sbjct 24520 TTATTTGCATCTTCCAGTTTAACAATACCAGTGATACGAGAACGTTTGGAC-CCATCGGT 24578 Query 169550 TTTCTTGAG 169558 ||| ||||| Sbjct 24579 TTTTTTGAG 24587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980158395880