Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq23 150 4e-31 >seq23 Length=1203155 Score = 150 bits (166), Expect = 4e-31 Identities = 151/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| | ||| | |||||| |||||||| |||||||| ||||| || ||||| || | Sbjct 978460 AGTCGGAGAACCAAGTGAAGGGTGGACTCCTTTTGAATGTTGTAGTCCGCAAGGGTGCGG 978519 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| || |||||||| || ||||| || || || ||||| ||||| |||||||| Sbjct 978520 CCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCTTCC 978579 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| |||||| || ||||||||||| || ||||| || | || Sbjct 978580 TTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTCGGAGGACTCCACCTCCAAAGTG 978639 Query 195103 ACCGTCTTTCCTGTCA 195118 | ||| || || |||| Sbjct 978640 ATCGTTTTGCCAGTCA 978655 Score = 143 bits (158), Expect = 6e-29 Identities = 145/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||||||||| ||||| ||||| |||||||| || | || | |||||||| Sbjct 977586 AACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGTGCGACCATCTTC 977645 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| |||||||| ||||| || || || ||||| ||||| || Sbjct 977646 AAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACCTTCCTTGTCATG 977705 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||||||||| || || ||||| ||| ||| || || | || | || || Sbjct 977706 GATCTTTGCCTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAAAGTGATTGTTTT 977765 Query 195111 TCCTGTCAA 195119 |||||||| Sbjct 977766 CCCTGTCAA 977774 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| |||||||| ||||| |||||||| || ||||| |||| || ||||| | ||| Sbjct 978766 TGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCAAGCGTTCGACCGTCTTCCAACTGT 978825 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||||||||| | ||| |||||||| ||||| || || ||||||||||| ||||| Sbjct 978826 TTGCCTGCGAAGATCAATCGCTGTTGGTCCGGAGGGATACCCTCTTTGTCTTGGATTTTG 978885 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || ||||| || || ||||| ||| || || || || |||| ||||| || ||| Sbjct 978886 GCTTTCACGTTGTCGATCGTGTCAGAAGACTCGACCTCTAGAGTAATGGTCTTGCCAGTC 978945 Query 195118 AA 195119 || Sbjct 978946 AA 978947 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| ||| |||||||| | ||||| || ||||| || ||||| ||||| | || | Sbjct 979035 AGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGCCAAGGTACGA 979094 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || ||||| | |||||||| || ||||| | ||| ||||| || || ||||| ||||| Sbjct 979095 CCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACCTTCC 979154 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||||||||| || ||||||||| ||||||||||| || || ||||| ||||| Sbjct 979155 TTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGACTTCCAGGGTG 979214 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 979215 ATGGTCTTCCCAGT 979228 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || ||||| ||||| || |||||||| || ||||| | || ||||| || ||| Sbjct 978184 TGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTACGACCGTCTTCAAGTTGC 978243 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| ||||| || ||||| || ||||| || || ||||| || ||||| || Sbjct 978244 TTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCCTCTTTATCCTGAATCTTG 978303 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||| ||||| || ||||||||||| ||| ||||| || || Sbjct 978304 GCCTTCACGTTGTCGATGGTGTCCGATGATTCAACTTCTAGAGT 978347 Score = 113 bits (124), Expect = 1e-19 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| || || ||||| || |||||||| || | || | ||||||||| Sbjct 977883 ACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTACGCCCATCTTCA 977942 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| || || || ||||| || || || || || || ||||||||| Sbjct 977943 AGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCCTCCTTGTCTTGA 978002 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || || ||||||||||| || || ||||| | || | ||| || Sbjct 978003 ATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAAAGTGATCGTTTTA 978062 Query 195112 CCTGT 195116 ||||| Sbjct 978063 CCTGT 978067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 ||||| ||||| ||||||||||| ||||| || |||||||||||||| ||||||||| Sbjct 979484 ATAAGACGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCTTGAATTTTAGCCTTGACGTTG 979543 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || || ||||| ||| || ||||| | ||||| || || || || Sbjct 979544 TCGATAGTGTCAGAAGACTCGACTTCCAAGGTAATTGTTTTGCCGGT 979590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480363274729