Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq23 113 3e-19 seq25 100 2e-15 >seq23 Length=1203155 Score = 113 bits (124), Expect = 3e-19 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||||||||| |||||||| ||| ||| || | || |||||||| | || Sbjct 977871 CGGAGACGGAGTACGAGATGAAGAGTAGATTCCTTTTGGATGTTGTAATCAGCCAAGGTA 977930 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||||||||| || ||||| ||||| ||||| |||||||| || || || || Sbjct 977931 CGCCCATCTTCAAGTTGTTTGCCAGCGAAAATGAGACGCTGTTGATCCGGGGGGATACCC 977990 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||||||||| || ||| ||||| || || | | | || || ||| Sbjct 977991 TCCTTGTCTTGAATCTTAGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACTTCCAA- 978049 Query 480731 GGTAATAGTTTTACCGGTGAG 480751 || || |||||||| ||||| Sbjct 978050 AGTGATCGTTTTACCTGTGAG 978070 Score = 107 bits (118), Expect = 1e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| || || | |||||||||| || || | || |||||||||||||| Sbjct 978166 CGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCAGCTAGAGTA 978225 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | |||||||||||||||||||| |||||||| || |||||||| ||||| ||||| Sbjct 978226 CGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGAGGGATTCCC 978285 Query 480672 TCCTTGTCTTGAATCTT 480688 || || || |||||||| Sbjct 978286 TCTTTATCCTGAATCTT 978302 Score = 91.5 bits (100), Expect = 1e-12 Identities = 120/163 (74%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||||| ||||| || | ||||| || ||| |||| ||| || || || || || | Sbjct 978457 CGAAGTCGGAGAACCAAGTGAAGGGTGGACTC-CTTTTGAATG-TTGTAGTCCGCAAGGG 978514 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | |||||||||||||| |||||||| || ||||| || || || ||||| || | Sbjct 978515 TGCGGCCGTCTTCAAGTTGCTTACCAGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGC 978574 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 |||||||||||||||| || |||||| ||||| || || Sbjct 978575 CTTCCTTGTCTTGAATTTTCGCCTTGACATTGTCAATGGTGTC 978617 Score = 86.0 bits (94), Expect = 4e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || |||||| || || ||||| || | || Sbjct 977574 ACGGAGACGGAGAACCAAGTGAAGAGTGGATTCTTTCTGAATGTTGTAATCCGCCAAGGT 977633 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||| |||||||| ||||| || || ||||| || || || || || || Sbjct 977634 GCGACCATCTTCAAGCTGCTTTCCGGCAAAGATCAGTCGTTGCTGGTCGGGGGGGATACC 977693 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGAC 480697 ||||||||| || |||||| ||||| Sbjct 977694 TTCCTTGTCATGGATCTTTGCCTTGAC 977720 Score = 86.0 bits (94), Expect = 4e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| | |||||| |||||||| || | || |||||||| || ||||| ||||||||| Sbjct 979098 TCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGGGGAATACCTTCCTTG 979157 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAAT 480736 ||||||||||| ||||| ||||| || |||| || | | ||| ||||| || Sbjct 979158 TCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCGA-CTTCCAGGGTGAT 979216 Query 480737 AGTTTTACCGGTGAGA 480752 || || || |||||| Sbjct 979217 GGTCTTCCCAGTGAGA 979232 >seq25 Length=1007441 Score = 100 bits (110), Expect = 2e-15 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 474335 GGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAGAA 474394 || ||||| | || || || ||| ||| || | ||| |||||||| | | || || Sbjct 562552 GGAATTGACCTTGGTACCACCTACTCTTGCGTTGGTGTATGGCAAAACGATCGTGTCGAG 562611 Query 474395 ATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACT 474454 || |||||||||||||| || ||| | || || || || || || |||| ||||| | Sbjct 562612 ATCATTGCCAATGACCAGGGAAATCGCACCACCCCGTCTTACGTCGCTTTCACTGACTCA 562671 Query 474455 GAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATT 474514 || | ||| ||||| ||||| ||||| | |||| || || ||| | || | Sbjct 562672 GAGCGTCTCATTGGTGATGCCGCTAAGAACCAAGTGGCCATGAACCCTCACCACACCGTC 562731 Query 474515 TTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATG 474574 ||||||||||| | | ||||| || || ||||| || || ||||||||||| ||| Sbjct 562732 TTTGATGCTAAGCGCCTCATTGGACGAAAATTTGAGGACGCCGAAGTCCAATCTGACATG 562791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268175468147876