Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq22 143 3e-29 >seq22 Length=1232782 Score = 143 bits (158), Expect = 3e-29 Identities = 414/628 (66%), Gaps = 22/628 (4%) Strand=Plus/Minus Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||||||||| | ||||| ||||| ||| || ||||||||||| ||| | || ||| Sbjct 877227 AACCAAAAGAACCTCGGAACCATCAAATCCTCCAACCTTTGCACGGAGATTATTGAATAC 877168 Query 76016 ACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTC 76075 | | || || ||||||||| ||||| || || |||||||| || | | | | Sbjct 877167 TCTGCCCCCGACGAAGTGGCTGTTTGTAATTTAGCCTCGATCGCCCTACCCACTTTTATT 877108 Query 76076 AATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACC 76135 ||| | | || |||| | ||||||||||||| |||| ||| || ||| Sbjct 877107 GTTGATGGTAAATACAATTTTCA------AAAACTTCATGAAGTCACCAAGGAGGTCACC 877054 Query 76136 AAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAG 76192 | ||||| || | |||| |||| |||| || || || |||| ||| |||| Sbjct 877053 TATAATCTGAATAGGATCATCGACATCAATTACTACCCGGTGCCTGAG---GCGAAAAAG 876997 Query 76193 TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT-TAT 76251 || || ||| ||||| | || |||||| | || |||||||| || || |||| || | Sbjct 876996 TCGAACATGAGACACCGTCCGATTGGTATCGGGGTTCAAGGACTAGCCGATGCCTTCCAA 876937 Query 76252 TTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGA 76311 || | |||| |||| || ||| | |||||| || | || || || || || Sbjct 876936 ATTCTAAAACTAC-CATTCGAATCACCAGCTGCCAAGAAGCTCAACACTGAAATTTTCGA 876878 Query 76312 AACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGC--TGAAGCCCAAGGTTCC 76369 ||| | ||||| || || ||||||| ||||||||| | ||| | ||| | Sbjct 876877 AACGCTTTATCATGCTTCATTGGAGGCCTCAAATGAATTGGCCATCAAG--GAGGGTCCT 876820 Query 76370 TATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAA 76429 |||||||| ||| || || ||||| ||||| | || || || || |||| |||| Sbjct 876819 TATGAGACCTTTCCCGGCTCACCCGCCAGTCAAGGTATCCTCCAATTCGACATGT-GGAA 876761 Query 76430 GGTGAAACC--AAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGG 76487 ||||| || || | | || ||||| | || ||| ||||| || | Sbjct 876760 CGTGAAGCCTTCAGAT-TTGTGGGAGTGGGACAGCTTGAAAGAAAAGGTCAAGACGACTG 876702 Query 76488 GTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGG 76547 || | || || |||||| | || || ||||| |||||||| || |||||| | | Sbjct 876701 GTATCCGGAATTCCCTTTTGCTCGCGCCTATGCCGACAGCCTCGACGAGTCAAATCCTTG 876642 Query 76548 GTAATAATGAATGCTTTGAACCATACAC 76575 | ||| || |||||||| |||||||| Sbjct 876641 GATTTAACGAGTGCTTTGAGCCATACAC 876614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568951230560