Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Puccinia_20horiana_20[genbank_20GCA_5F001624995.1_202016-04-20] 87 sequences; 66,403,143 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq23 107 4e-18 >seq23 Length=1203155 Score = 107 bits (118), Expect = 4e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| |||| ||||| | || ||||| | || | ||| || |||||| || ||| Sbjct 978739 ATACCCCCTCGCAGACGGAGGACCAAATGAAGGGTGGACTCCTTTTGGATATTGTAGTCA 978798 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| | || ||||| ||||| || || ||||| |||| |||||| || || Sbjct 978799 GCAAGCGTTCGACCGTCTTCCAACTGTTTGCCTGCGAAGATCAATCGCTGTTGGTCCGGA 978858 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| ||||| ||| || || || | || || || || Sbjct 978859 GGGATACCCTCTTTGTCTTGGATTTTGGCTTTCACGTTGTCGATCGTGTCAGAAGACTCG 978918 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAA 192515 || |||||||||||||| || ||||| || Sbjct 978919 ACCTCTAGAGTAATGGTCTTGCCAGTCAA 978947 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| ||||| | || ||||| | |||| ||| || ||| || |||||| Sbjct 978157 ATGCCTCCTCGGAGACGAAGAACCAAATGAAGTGTAGACTCCTTTTGGATGTTGTAATCA 978216 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | ||| || ||||| || || | | ||||||||| || Sbjct 978217 GCTAGAGTACGACCGTCTTCAAGTTGCTTTCCAGCGAAAATAAGGCGCTGTTGATCGGGA 978276 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| |||||||| || || || || || || || | || || ||||| Sbjct 978277 GGGATTCCCTCTTTATCCTGAATCTTGGCCTTCACGTTGTCGATGGTGTCCGATGATTCA 978336 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||||||||| |||||||| || || Sbjct 978337 ACTTCTAGAGTGATGGTTTTGCCGGT 978362 Score = 93.3 bits (102), Expect = 8e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| || || || | || || || | || || ||| || || || Sbjct 979023 ATACCACCACGAAGTCGCAACACAAGGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCG 979082 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || |||||||| |||||||||||||| |||| ||||||||| || Sbjct 979083 GCCAAGGTACGACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCGCTGTTGATCCGGG 979142 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | || || || || Sbjct 979143 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCAATGGTGTCAGATGACTCG 979202 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGT 192512 ||||| || || ||||| || ||||| Sbjct 979203 ACTTCCAGGGTGATGGTCTTCCCAGT 979228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478902612450